PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0028s0045.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MIKC_MADS
Protein Properties Length: 438aa    MW: 47986.7 Da    PI: 7.2676
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0028s0045.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.6e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien +nrqvt+skRrng++KKA+ELSvLCd+++ +i+fs++gkl  ys+
  Sphfalx0028s0045.2.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDIGLIMFSPSGKLTQYSN 59
                          68***********************************************85 PP
2K-box17.12.3e-071352001072
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGed..Les.LslkeLqqLeqqLekslkkiRskKnel 72 
                           ++ +   lq+el+kL  e + Lq+  R +l ++  +++  s+++L ++e++Le++l+++R +Kn +
  Sphfalx0028s0045.2.p 135 KNYEVGVLQEELKKLTHEKDLLQQRARLILADEqiIQTvTSVQQLANMETELEQALERVRHRKNYI 200
                           55566679***************9999988765444542589*********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.114161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.40E-37273No hitNo description
SuperFamilySSF554558.5E-31287IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.11139229IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDIGLIMFSP SGKLTQYSNC  60
SIEDVITRFA NLPLHERNKS FEDMLTRFAN CHMHHDRSKY TRKSENLEYL HKALKKLGGE  120
KDLALTQQLA SGSSKNYEVG VLQEELKKLT HEKDLLQQRA RLILADEQII QTVTSVQQLA  180
NMETELEQAL ERVRHRKNYI TNAYDQAASA IQRQHEFMGN MQLMAMQRGG AMAGAAQASP  240
FLQWNMPERD QPATLQDFME HQSNATSLLP AQMSREVVSN SGASTSGFFP VPSQTELHQT  300
LGHMSLPPGI NAAAAARGLT IHELDIHDPS ASTGQYHDEK KAKLEGGGAG NTSMIFAAAS  360
SSSAGAAATA ADQVGAAAAA AADAFVSPDE QQQHAGNSAA APWHSAHQSH HHHHQQAYSG  420
GSQYPAAYFT QNSDAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-18185185MEF2 CHIMERA
6byy_B7e-18185185MEF2 CHIMERA
6byy_C7e-18185185MEF2 CHIMERA
6byy_D7e-18185185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344570.0GQ334457.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383906.11e-168agamous-like MADS-box protein AGL66 isoform X2
TrEMBLD3IZT90.0D3IZT9_9BRYO; MIKC* MADS-box transcription factor
STRINGPP1S90_121V6.21e-167(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-39AGAMOUS-like 66