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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sphfalx0028s0031.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 341aa MW: 36898.3 Da PI: 10.729 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 68 | 1.4e-21 | 28 | 71 | 5 | 48 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
+++++++k+F+ pi+dAA++Lgvc+++LKriC ++GI+RWP+Rk
Sphfalx0028s0031.1.p 28 LTFNEVAKFFAVPIADAAQKLGVCVSTLKRICKENGIPRWPYRK 71
89*****************************************9 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 15.664 | 12 | 95 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 7.9E-21 | 28 | 72 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 341 aa Download sequence Send to blast |
MPSDYLLNRN MVKLGMAPQS VSWADGPLTF NEVAKFFAVP IADAAQKLGV CVSTLKRICK 60 ENGIPRWPYR KFLAGKSIED IKQDALRDMA NNQLVNQRLE QQQLKPPPSA HNRDSVSGTP 120 HLGAKLLVAG GHADPKLFMM QPTVAVNQLL PHQSSMQPHR TFPVQSHVPV LRITPPQQPT 180 ATQGNNSASA STPSTYVRSP LSAGTLPAQT LQKQKAPIPS FLDELKLGYP SKGLSRASSR 240 WWGPATTGNG KDTAIAGALG SEVDQDDTDT VSEVKACTTA SALFLRTRKK AAIRGRRVLS 300 HAALRGYGVQ RLDAKDAALL RFVFANQLPK QWTAAFPPIT * |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G20640.2 | 9e-12 | Nin-like family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Sphfalx0028s0031.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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