PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0028s0007.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 781aa    MW: 85186 Da    PI: 4.5566
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0028s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.61.4e-5461331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +ppGfrFhPtdeelv +yLk+kv+g+++e+ +vi  v++yk+ePwdLp k ++ ++++ewyfFs+rdkky++g+r+nratk+gyWkatg
  Sphfalx0028s0007.1.p   6 VPPGFRFHPTDEELVAYYLKRKVSGRSIEA-DVIGVVELYKCEPWDLPdKsCIGGNDQEWYFFSPRDKKYPNGSRTNRATKAGYWKATG 93 
                           69****************************.99**************96347888999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ v s +++++g+kktLvfy grap+ge+tdWvmheyr+
  Sphfalx0028s0007.1.p  94 KDRVVRS-GSRNIGTKKTLVFYLGRAPNGERTDWVMHEYRI 133
                           ****999.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-614154IPR003441NAC domain
PROSITE profilePS5100559.3696154IPR003441NAC domain
PfamPF023651.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MARRRVPPGF RFHPTDEELV AYYLKRKVSG RSIEADVIGV VELYKCEPWD LPDKSCIGGN  60
DQEWYFFSPR DKKYPNGSRT NRATKAGYWK ATGKDRVVRS GSRNIGTKKT LVFYLGRAPN  120
GERTDWVMHE YRIEEEEVSA GFQDAYVLAR VFKKSGPGPK NGEQYGGAFI EEAYQSPPQE  180
ESVVILPVEE LEVPPEPGTA LELVPDVKTE ISMDSARSPV TAAPEGLSKM PEYEMMKDYL  240
EGETTSSKIT YPLPDEWEVH TSHHDSQFLG AFAEPLALDD EALMLQDMLE IAESGGQGIL  300
VEGDQREDFI NQFLSGGVVG EELTLECDGG EFSLAEIEGH GAPVLYGGEE LTPWEILDGD  360
FIELNDLLFS IDEAPSQSPE SVIHLRARQS ANLSIQQNEQ GRAKRRSMLQ MRASGSGPVP  420
RPISHLESSG GGQSLPPMNL LELTQSSAAT AHDSKLETGH HEPLSEERLS GLHSPSFPSE  480
DKVATVDCRL NLQELEDYLI TGLLPQSASS DGHTSGTTVD LDSEGTPLLP RTSEDVLATT  540
PSDNNTIHGV AAESATTVSG SLDFDYSGFQ SWFDEEIYHP ATPQLGDNLM QSDSSTFYPS  600
EYTLQKLQNS QPPLKSAAIC TDASEQTKKR LEGLFHLLGS FPTPPASAAE YSQAGAASSS  660
FSSISVTATD SHLTTFTIIC SCSNQGTQQA QVAVTSGHPT AGGKCDKDIL TRPQQPCKGD  720
CKQLACGTCS AKRSPTRQLA KGSKSGFVFV FLLGAVSALC WFFMLRGMWW AVHRTYSVIL  780
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3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-51215411168Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-76NAC domain containing protein 28