PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0027s0084.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ARF
Protein Properties Length: 889aa    MW: 98577.5 Da    PI: 6.2295
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0027s0084.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.2e-24135236199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD v+F
  Sphfalx0027s0084.2.p 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDCVLF 221
                           99*****************************8544444..48*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++++l+++++r+
  Sphfalx0027s0084.2.p 222 I--RDDKGQLLLGIRRA 236
                           *..5688999****997 PP

2Auxin_resp121.75.3e-40261343183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a haa+t+s F+++YnPr+s+seFv++v+k++ka++++v+vGmRf+m fete+ss rr++Gt++g+ dldp+rWp+S WrsLk
  Sphfalx0027s0084.2.p 261 ANHAAATNSRFTIFYNPRQSPSEFVIPVAKYHKAINTQVTVGMRFRMVFETEESSVRRYMGTITGIGDLDPIRWPKSDWRSLK 343
                           679******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-47124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-42128250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-22134235No hitNo description
PfamPF023623.6E-22135236IPR003340B3 DNA binding domain
SMARTSM010191.2E-22135237IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929135237IPR003340B3 DNA binding domain
PfamPF065075.7E-36261343IPR010525Auxin response factor
PROSITE profilePS5174522.727753837IPR000270PB1 domain
SuperFamilySSF542773.4E-8768832No hitNo description
PfamPF023096.0E-7799841IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MYPCPPMRLS APGYSPPSLS TEQDRRCLNS ELWHACAGPL VSLPSVSSRV VYFPQGHTEQ  60
VAASTQKELD SHIPNYPNLP SWLICLLDNV TLHADLETDE VYAQMTLIPL PTSQQKNALL  120
AQDLPKPNRQ PTDYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFSQQP PAQELIARDL  180
HDQEWHFRHI YRGQPRRHLL TTGWSVFVSA KRLQAGDCVL FIRDDKGQLL LGIRRANRQQ  240
MIMPSSVLSS DSMHIGVLAA ANHAAATNSR FTIFYNPRQS PSEFVIPVAK YHKAINTQVT  300
VGMRFRMVFE TEESSVRRYM GTITGIGDLD PIRWPKSDWR SLKVGWDEST AGERQHRVSI  360
WDIEPLPAPF LLCPPPLAFR SKRTRGSRGE EDIESWLKKS QMWAGGSDSL GVPNFHSLGM  420
DSSTPRIRPP QQRLESAVPS PQNEFYRALA AEALQEIRTR DSSKQFHPQS LLSSQQLHFQ  480
SQQQDQQSMH QMVDASGPLL QLSFSGPQPQ VDLVCSMRPE TSYCESELQM VPSSFSLQGL  540
LGTTAQTNSP TRENNHFFNI LRPNQSEMQT SIQGTDLIVQ DPQVSPWFST MQNQNQTDAQ  600
PMGSTRLGGQ ADSSPCSQVM SPFTHPQRSQ VSVEAGLAEL PPLGGFRDNE QDGDQLQADR  660
HLLFGVPIDQ PLTASAPLNS HHTYHEKTRE QQDGFPGSHI LQGAFGPPAT PDHPTIAASG  720
VISTGGMDNN GVYQRNSVAS WSSMQAAPPP PLRTFTKVHK SGMPGRSLDV RNFHNYAELR  780
SELAQMFNLE GMLDGPVKSG WQLVFVDHEN DTLLVGDDPW EEFVNCVRSI KILSPSEVSH  840
MTQDQFEILD AAAAAPPPPP PIQQQAASSN SEDVAHTQTS APNPNMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1562836451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385779.10.0auxin response factor 6-like isoform X1
RefseqXP_024385788.10.0auxin response factor 6-like isoform X1
RefseqXP_024385797.10.0auxin response factor 6-like isoform X1
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A2K1LBN00.0A0A2K1LBN0_PHYPA; Auxin response factor
STRINGPP1S163_119V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]