PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0027s0084.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 889aa MW: 98577.5 Da PI: 6.2295 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.4 | 3.2e-24 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD v+F Sphfalx0027s0084.1.p 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDCVLF 221 99*****************************8544444..48*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++++l+++++r+ Sphfalx0027s0084.1.p 222 I--RDDKGQLLLGIRRA 236 *..5688999****997 PP | |||||||
2 | Auxin_resp | 121.7 | 5.3e-40 | 261 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a haa+t+s F+++YnPr+s+seFv++v+k++ka++++v+vGmRf+m fete+ss rr++Gt++g+ dldp+rWp+S WrsLk Sphfalx0027s0084.1.p 261 ANHAAATNSRFTIFYNPRQSPSEFVIPVAKYHKAINTQVTVGMRFRMVFETEESSVRRYMGTITGIGDLDPIRWPKSDWRSLK 343 679******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.2E-47 | 124 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-42 | 128 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-22 | 134 | 235 | No hit | No description |
Pfam | PF02362 | 3.6E-22 | 135 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-22 | 135 | 237 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.929 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.7E-36 | 261 | 343 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.727 | 753 | 837 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.4E-8 | 768 | 832 | No hit | No description |
Pfam | PF02309 | 6.0E-7 | 799 | 841 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MYPCPPMRLS APGYSPPSLS TEQDRRCLNS ELWHACAGPL VSLPSVSSRV VYFPQGHTEQ 60 VAASTQKELD SHIPNYPNLP SWLICLLDNV TLHADLETDE VYAQMTLIPL PTSQQKNALL 120 AQDLPKPNRQ PTDYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFSQQP PAQELIARDL 180 HDQEWHFRHI YRGQPRRHLL TTGWSVFVSA KRLQAGDCVL FIRDDKGQLL LGIRRANRQQ 240 MIMPSSVLSS DSMHIGVLAA ANHAAATNSR FTIFYNPRQS PSEFVIPVAK YHKAINTQVT 300 VGMRFRMVFE TEESSVRRYM GTITGIGDLD PIRWPKSDWR SLKVGWDEST AGERQHRVSI 360 WDIEPLPAPF LLCPPPLAFR SKRTRGSRGE EDIESWLKKS QMWAGGSDSL GVPNFHSLGM 420 DSSTPRIRPP QQRLESAVPS PQNEFYRALA AEALQEIRTR DSSKQFHPQS LLSSQQLHFQ 480 SQQQDQQSMH QMVDASGPLL QLSFSGPQPQ VDLVCSMRPE TSYCESELQM VPSSFSLQGL 540 LGTTAQTNSP TRENNHFFNI LRPNQSEMQT SIQGTDLIVQ DPQVSPWFST MQNQNQTDAQ 600 PMGSTRLGGQ ADSSPCSQVM SPFTHPQRSQ VSVEAGLAEL PPLGGFRDNE QDGDQLQADR 660 HLLFGVPIDQ PLTASAPLNS HHTYHEKTRE QQDGFPGSHI LQGAFGPPAT PDHPTIAASG 720 VISTGGMDNN GVYQRNSVAS WSSMQAAPPP PLRTFTKVHK SGMPGRSLDV RNFHNYAELR 780 SELAQMFNLE GMLDGPVKSG WQLVFVDHEN DTLLVGDDPW EEFVNCVRSI KILSPSEVSH 840 MTQDQFEILD AAAAAPPPPP PIQQQAASSN SEDVAHTQTS APNPNMDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-156 | 28 | 364 | 51 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385779.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_024385788.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_024385797.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Swissprot | Q2QM84 | 0.0 | ARFY_ORYSJ; Auxin response factor 25 | ||||
TrEMBL | A0A2K1LBN0 | 0.0 | A0A2K1LBN0_PHYPA; Auxin response factor | ||||
STRING | PP1S163_119V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0027s0084.1.p |
Publications ? help Back to Top | |||
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