PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0027s0007.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 269aa MW: 28576.1 Da PI: 7.4823 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.6e-08 | 116 | 156 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Sphfalx0027s0007.2.p 116 ARHRRERISDRIRMLQRLVPGG-----TKMDTASMLDEAIHYVKFL 156 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-14 | 108 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.66E-11 | 109 | 161 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-14 | 111 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-13 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-6 | 117 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MVDSNSEMAA EGDNSGSGFC SLSSSSGEPP AGVIGQLQLA VAVSNEACDD RKPNVDQGVL 60 VMPGDQMMRA MLLFRSAAVG AAAVGGAREI ETSGMTRPIK TRRNMRISKD PQSVAARHRR 120 ERISDRIRML QRLVPGGTKM DTASMLDEAI HYVKFLKLQL QALEQLGNNF DPNFTVGMPA 180 FHPISHHPPA AAAAAAHHHH AVLRSLDVNC SAYQVAAAAA ASSPSMANAS HSSSDPSSGS 240 HHITGHHWPR TSSSSLCFPD HPQEQFCH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 1e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0027s0007.2.p |