PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0027s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 36197.7 Da PI: 7.1194 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.6 | 2.2e-08 | 187 | 227 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Sphfalx0027s0007.1.p 187 ARHRRERISDRIRMLQRLVPGG-----TKMDTASMLDEAIHYVKFL 227 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 179 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-10 | 180 | 232 | No hit | No description |
SuperFamily | SSF47459 | 6.15E-14 | 182 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-13 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 188 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MMKKSYKHSL GEEELDQPAD VVLPLQQLEE LAGVTNSQCG VLLRKLSSQG GGEYCGRESL 60 LQKPVSSSSS SMVDSNSEMA AEGDNSGSGF CSLSSSSGEP PAGVIGQLQL AVAVSNEACD 120 DRKPNVDQGV LVMPGDQMMR AMLLFRSAAV GAAAVGGARE IETSGMTRPI KTRRNMRISK 180 DPQSVAARHR RERISDRIRM LQRLVPGGTK MDTASMLDEA IHYVKFLKLQ LQALEQLGNN 240 FDPNFTVGMP AFHPISHHPP AAAAAAAHHH HAVLRSLDVN CSAYQVAAAA AASSPSMANA 300 SHSSSDPSSG SHHITGHHWP RTSSSSLCFP DHPQEQFCH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 4e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0027s0007.1.p |