PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0026s0134.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 702aa    MW: 73391.7 Da    PI: 8.6294
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0026s0134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37e-07440461223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C++Cgk F+r  nL+ H+r H
  Sphfalx0026s0134.1.p 440 FCEICGKGFKRDANLRMHMRGH 461
                           6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-5436463No hitNo description
PROSITE profilePS5015712.113439466IPR007087Zinc finger, C2H2
SMARTSM003550.0026439461IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5441465IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280441461IPR007087Zinc finger, C2H2
SMARTSM0035576491524IPR015880Zinc finger, C2H2-like
SMARTSM0035521529551IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MIKAGGSQSD SRLPLSSPLQ ESSLSGSGTP NLVAFSLLGQ QMKKFTSPQQ QQSHHQSLNA  60
AFLQFPLSGN SQHNHQQPQP HQREPKVLNG GAPGMFQNPQ QPPNVGQSFG QQQQQFSGQM  120
AAANQGSLQD NTTNHLLGGG LSVQVLMNGL AMLQQKVQQL QALVPLLTQS AHGQSNASVV  180
IAQQQAASAA VSSILAQLVA AANGMLPQHV PAAAAVQQSN KVPNLELSQL LGAGTNNQNL  240
NFFQQSGLDS PLGTSLGTSL GDLLGNKLFG NSFLSPDGLE RSGFGGTGGV GGGGGESGLG  300
NDGRGFGNGG GSAGSEVAWH KELAGQQHVA KDQSSKGMLR VQLENLLEKP HSNGHGVGRS  360
GGIQVGSHGM SSSAAGSSLV GNIAGGAHHE SRGMSTARPE EHDASFGADE DDGIVENLPP  420
GSYDLVEMDA MEILAEHTHF CEICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPEKASNS  480
QLPSVVRPRR YSCPYVGCKR NKKHRKFLPL KTMLCVKNHY RRSHCPKMLT CTKCNSKKFS  540
VVADLKTHEK HCGRDKWQCS CGTTFSRKDK LFGHVSLFAG HTPATPMNVE MGEGNAPLDA  600
EFSAHGNNSG AAGFMSGSAT GTHFASQVGG SRRGSEKGSE MGHMSGAGGM GLQLGAGGIS  660
NNNHDTSPPA SSYNQNAMLQ GLFTNTFHQS SSGNASSDGL H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S13_145V6.11e-120(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-94C2H2 family protein