PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0026s0103.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 412aa    MW: 45404.8 Da    PI: 4.7164
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0026s0103.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-18134187356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t eq++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Sphfalx0026s0103.1.p 134 KKRRLTFEQVRSLETNFELDNKLEPERKMQLAMELGLQPRQVAVWFQNRRARWK 187
                           5668999**********************************************9 PP
2HD-ZIP_I/II120.49.1e-39134225293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl+ eqv++LE++Fe ++kLeperK++la eLglqprqvavWFqnrRAR+ktkqlE+dye+L   y +lk++ e++ +e+e+L++e
  Sphfalx0026s0103.1.p 134 KKRRLTFEQVRSLETNFELDNKLEPERKMQLAMELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSMDYSRLKAQFESIVQEKESLKTE 222
                           9**************************************************************************************99 PP

           HD-ZIP_I/II  91 lke 93 
                           +++
  Sphfalx0026s0103.1.p 223 VQR 225
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-19128191IPR009057Homeodomain-like
PROSITE profilePS5007116.941129189IPR001356Homeobox domain
SMARTSM003891.6E-14132193IPR001356Homeobox domain
CDDcd000862.93E-16134190No hitNo description
PfamPF000469.3E-16134187IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-20135196IPR009057Homeodomain-like
PRINTSPR000311.7E-5160169IPR000047Helix-turn-helix motif
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5169185IPR000047Helix-turn-helix motif
PfamPF021833.9E-15189230IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAATSAMMRG FGAHENVFPQ SFMRNAAESS DPGDSLVAML ASSCSNMGGL QVVTPHVALG  60
GSLEDAVIGH TRRCGQKRQA LFDYPSFDSC SSPPPVELLY EAVDEEYGAT AAGADELQFM  120
CSSPSSSNNI VESKKRRLTF EQVRSLETNF ELDNKLEPER KMQLAMELGL QPRQVAVWFQ  180
NRRARWKTKQ LERDYEVLSM DYSRLKAQFE SIVQEKESLK TEVQRLSGRK NEQHVLLQEP  240
SRSGSHETAT TVMILPSSST QKLQEEEEEQ QQQQQVMVLQ QLDHEEQSTS CTADQDSCSN  300
SSEILNRDSP GTTTTKTTIH TSLNTLLPPP SQLAVMLTPD QGNSCIPGLH KIFTAPPAAA  360
VDKISTFTVP DPLADHSCNN FFLSQLDVEK ATAAAASGAV CNSMLWWDTW S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181189RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-37homeobox protein 16