PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0026s0062.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1297aa MW: 142123 Da PI: 7.3969

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0026s0062.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.7e-09	57	93	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +W++++ el++++++++G++ Wk++a m +Rt +++ Sphfalx0026s0062.1.p 57 PWSEDDLELFYQGFRKYGKD-WKKVAGSMH-KRTVEMVE 93 8***************99.*****.999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.82E-10	53	102	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-6	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-7	57	98	IPR001005	SANT/Myb domain
CDD	cd00167	9.12E-7	57	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-4	57	98	IPR009057	Homeodomain-like
Pfam	PF06584	9.3E-31	690	790	IPR033471	DIRP domain
SMART	SM01135	1.7E-56	690	791	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1297 aa Download sequence Send to blast
MASARRPRTS ARPAAAAANK SAEGGSGGGV AAEREYYDGG EKSKQRKRKL TDMLGPPWSE 60 DDLELFYQGF RKYGKDWKKV AGSMHKRTVE MVEALYNTNK AYLSLPEGAA SAAGLIAMMT 120 DHYNLLDESQ SQDEDTSDEL GISDEPLQQT QPLKLKLGAG SLGLENSMMR SNGPVGTNAF 180 SGASPAKKPR TNRSRTVGKR ISRFPVESTV ERKVKHRVSP TSLAMQDEEE SDSHVVVAQT 240 VVSRRTASPS VSNTPSRRSL RQVTAQQNGE SKETLLRAES DASVKPATAM TARLDFRSDE 300 SQESKEYDGA MRASSSTCEK RVGVNGKKAF AGEARSRLKR PTPKVTKLHN IDDKYCDAKD 360 FYKNLDAEVD VEEEEEEGYR HGNGADGPVE VSKQEAPGHR HQHHFPALQR PKKRSRQLFS 420 GDNNSGLDAL ATLAASSLSG FDLDKSLNVF ADAAAALEDS REETESIPEK QASPKHRDAM 480 GETNNQQANV KLELENGNVQ GEGREKDDKK DTGSAAVLVV DRQPSTSPES QKRKRKTYVP 540 KANLATDEDA GVVLKPRSRL KRTPGTKALS SKPGPKPIKK QSETAAEDGD LTSQGKEPIV 600 EEEEDQAMEI DESSPPLKLW SKKKGVPEKF AVERVSTTVL GRASPHDELL QKQPPHCAHT 660 TPDLGPASAT ARLTHCLCPK IRRWCMCEWF YSAIDLPWFA RNEFVEYLNH AGLGHVPRLT 720 RVEWGVIRGS LGKPRRLSKR FLEEEREKLA IYRDSVRTCY HELRTGLREG LPVDLARPLT 780 VGQKVIARHP KTREMHDGSI LTVDRCRCRV QFDRPDLGVE LVQDIDAMPI HPLENMPEVM 840 RRCRVLMDSG DCSLLEDAKD HKLRVAVSAG GAARAALNER LEWPSRHMIP FTHLSLNDLS 900 KRAQADSVDS VRSAKAATNE AAAAAQKVVL SQPFGVSQSQ ARDADVRALA DLSRALDKKE 960 ALVVELRQMN DEANANCDGL RVSEVFQRQY ATVVLQLKEA NKQVTTALIQ LRQRNKYQEN 1020 AVPPWHRCTP QGLYILGSSD SADMVDVDPL DQGPGLAEMA NSAKKHARLL VNTAVKAINA 1080 VKEGEDAFQK LGCALEVLPK VGGFSVALQA PTPCVPLTAE ATVPLTGACT SRELPQSVGQ 1140 SSSSLSGTEE ITDPDFKVTG SPANMPQLAN DSGVKSLPTT LEAAAHDLMQ HLNQAELNSE 1200 NTEGALLVEF MTSCVATLFM LQTLSDRTYS LADVNQTLDI ALMSLRPKSA QNHFIYKEIE 1260 QQLGIVKAQI MALIPIRSAV QLGVDTSLTQ THNTQL*

Sequence ? help Back to Top

Protein Sequence Length: 1297 aa Download sequence Send to blast

MASARRPRTS ARPAAAAANK SAEGGSGGGV AAEREYYDGG EKSKQRKRKL TDMLGPPWSE  60
DDLELFYQGF RKYGKDWKKV AGSMHKRTVE MVEALYNTNK AYLSLPEGAA SAAGLIAMMT  120
DHYNLLDESQ SQDEDTSDEL GISDEPLQQT QPLKLKLGAG SLGLENSMMR SNGPVGTNAF  180
SGASPAKKPR TNRSRTVGKR ISRFPVESTV ERKVKHRVSP TSLAMQDEEE SDSHVVVAQT  240
VVSRRTASPS VSNTPSRRSL RQVTAQQNGE SKETLLRAES DASVKPATAM TARLDFRSDE  300
SQESKEYDGA MRASSSTCEK RVGVNGKKAF AGEARSRLKR PTPKVTKLHN IDDKYCDAKD  360
FYKNLDAEVD VEEEEEEGYR HGNGADGPVE VSKQEAPGHR HQHHFPALQR PKKRSRQLFS  420
GDNNSGLDAL ATLAASSLSG FDLDKSLNVF ADAAAALEDS REETESIPEK QASPKHRDAM  480
GETNNQQANV KLELENGNVQ GEGREKDDKK DTGSAAVLVV DRQPSTSPES QKRKRKTYVP  540
KANLATDEDA GVVLKPRSRL KRTPGTKALS SKPGPKPIKK QSETAAEDGD LTSQGKEPIV  600
EEEEDQAMEI DESSPPLKLW SKKKGVPEKF AVERVSTTVL GRASPHDELL QKQPPHCAHT  660
TPDLGPASAT ARLTHCLCPK IRRWCMCEWF YSAIDLPWFA RNEFVEYLNH AGLGHVPRLT  720
RVEWGVIRGS LGKPRRLSKR FLEEEREKLA IYRDSVRTCY HELRTGLREG LPVDLARPLT  780
VGQKVIARHP KTREMHDGSI LTVDRCRCRV QFDRPDLGVE LVQDIDAMPI HPLENMPEVM  840
RRCRVLMDSG DCSLLEDAKD HKLRVAVSAG GAARAALNER LEWPSRHMIP FTHLSLNDLS  900
KRAQADSVDS VRSAKAATNE AAAAAQKVVL SQPFGVSQSQ ARDADVRALA DLSRALDKKE  960
ALVVELRQMN DEANANCDGL RVSEVFQRQY ATVVLQLKEA NKQVTTALIQ LRQRNKYQEN  1020
AVPPWHRCTP QGLYILGSSD SADMVDVDPL DQGPGLAEMA NSAKKHARLL VNTAVKAINA  1080
VKEGEDAFQK LGCALEVLPK VGGFSVALQA PTPCVPLTAE ATVPLTGACT SRELPQSVGQ  1140
SSSSLSGTEE ITDPDFKVTG SPANMPQLAN DSGVKSLPTT LEAAAHDLMQ HLNQAELNSE  1200
NTEGALLVEF MTSCVATLFM LQTLSDRTYS LADVNQTLDI ALMSLRPKSA QNHFIYKEIE  1260
QQLGIVKAQI MALIPIRSAV QLGVDTSLTQ THNTQL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388273.1	0.0	protein ALWAYS EARLY 3-like isoform X2
TrEMBL	A0A2K1JVW8	0.0	A0A2K1JVW8_PHYPA; Uncharacterized protein
STRING	PP1S31_116V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-112	DNA binding

Link Out ? help Back to Top
Phytozome	Sphfalx0026s0062.1.p