PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0026s0055.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 553aa    MW: 59857.6 Da    PI: 4.4838
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0026s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18145198356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t +q++ Le+ Fe+++++  +++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0026s0055.1.p 145 KKRRLTLDQVRSLERNFEEENKLESDRKLQLAKELGLQPRQVAVWFQNRRARWK 198
                           56789************************************************9 PP
2HD-ZIP_I/II1162.2e-37145235292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl+ +qv++LE++Feee+kLe++rK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy++L + y++lk++ ++  +e++eL+++
  Sphfalx0026s0055.1.p 145 KKRRLTLDQVRSLERNFEEENKLESDRKLQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYQVLTSDYNKLKTQLQAAIEEKQELQAK 233
                           9**************************************************************************************99 PP

           HD-ZIP_I/II  91 lk 92 
                           ++
  Sphfalx0026s0055.1.p 234 VQ 235
                           87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-19134202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-19135201IPR009057Homeodomain-like
PROSITE profilePS5007117.67140200IPR001356Homeobox domain
SMARTSM003893.8E-16143204IPR001356Homeobox domain
CDDcd000863.89E-17145201No hitNo description
PfamPF000461.0E-15145198IPR001356Homeobox domain
PRINTSPR000312.0E-5171180IPR000047Helix-turn-helix motif
PROSITE patternPS000270175198IPR017970Homeobox, conserved site
PRINTSPR000312.0E-5180196IPR000047Helix-turn-helix motif
PfamPF021834.9E-11200239IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MQLLVRGQYP DFGFLNQLPE MTTSNSVGQL VRSGFGYTAA AGAAQSNIVQ QMLQMRQGEM  60
SSCNPTDTMV QAMLASRSSG RLEDAVVGCG QKRGPSSISG YPACFETATT SVEELAATTA  120
AETYDDVGED SISCAQYYNN NVESKKRRLT LDQVRSLERN FEEENKLESD RKLQLAKELG  180
LQPRQVAVWF QNRRARWKTK QLERDYQVLT SDYNKLKTQL QAAIEEKQEL QAKVQGLSAG  240
KGKPGDQEES LGCETAAAKG AAGDEVRKVI RVLESTAAAT APSTLQQQLH PACSNDHAAD  300
DIQLMIKPES KLVVELSNNM SCCRSADDVQ IKNVHESARS SFLPDQDQVP SNCWTSRSEQ  360
LEYGSPISST VASPSSEILD ADSPRTIDSC TTLSQLTQVM DLKLVGTSFS SSSSGYSHEL  420
MGGSAALDHT IGNPAASCMI DFTSIIITEE DMCCSNVDPP LVLDHSPLRT VQDSSSYPRT  480
TAIKLEPDAA DDHEAAVIMG ATSTIFQDST DSFINYSLFQ NQLAHVDAVV EHAAGLAGGS  540
AATALPWWDN WP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192200RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-34HD-ZIP family protein