PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0026s0046.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 1010aa MW: 107402 Da PI: 6.1669

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0026s0046.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.7e-12	788	833	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++ + ++ +Lr+++P+ kK++K ++L ++eYI++L Sphfalx0026s0046.1.p 788 NHKLAERDRRQKFKAKILTLRTIIPPT-----KKNDKLSVLSNTIEYIREL 833 79**********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.246	784	833	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	787	851	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-10	788	837	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.7E-13	788	837	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	788	833	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-12	790	839	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1010 aa Download sequence Send to blast
MNVAEEQRSS SLTGIISMEY HAAGASYANH HHLHRYRVES DWEEKLQALL QNWQWIDYAV 60 VWKLTHLNRP LEWSTGYFND RSLASLPNAQ RLSFSDYKSC AFTRSSYRCA VKALSQRFPL 120 WWTSDSPRLP TDEPKDQFLQ ASGIKTIVCL PGHGSDANMY CLELASRNLI MESSELLHAL 180 QNFVSGASYA FPAPQLFASN NYGAYNLLGP GGPWSSSYEE PDRSSLRVGG EGEGAAAGGG 240 GSGASAGAVV VAAQAVASGS LELVPGALSG NNLVPGGSDR RIFNPAVAGG SSTTAPPHVN 300 SIPACSFEEE ISSSSNLVGV ADPWFNAHKF GAVPVPFGSS PSVQVSSTMG TNSGDEGMVA 360 LVHHHHHHHQ QQQQQQQQEV DTVAAGLSSS TSHDGNGAET VSAEMMAHLW ASVSDTDVDV 420 EMPGISSIMS RPAFDALVMA FENDPSPTTT SFAAAAGAGA DHHMSEAAAA PPHATSTSSC 480 FDSLAVAAAA AGAYGTHADL AFHHLLQHGS QQSAASADTS CCNCSNSGFD SPSYSLPPES 540 RGAALSCCNA SSVVVPGSLS CLPADASSSH VDKLILAQRA GAPAGDRNPP AAGVTVIDQG 600 ASMNPGAPGA AGGHQAAFQE NPFHEQQQQQ ASSTEDSHVS RRNLSPFQSL EAAANRQSKH 660 PRFDEVSTTV AAEAVGVITA GSMTSAATHE SARQPMIDLW KNQLVPRIQQ SDSMQRRQPA 720 AGQQPHQPEA ELENHHHSGG SLPRTTVQQQ LARSCSSIPA EPQTSEVPSE LMNFSPGWHD 780 DQAHIAHNHK LAERDRRQKF KAKILTLRTI IPPTKKNDKL SVLSNTIEYI RELKGQVTTL 840 QKPPRIISSS LQQNLTNPVQ AAAPTVAAPG PSTSCNPIIN SNTNTSSVVV SVEVGGGSST 900 GELIIKVQAP KNPHTQTLIQ ILTQMQDLEL EIGSLSYDLS TNDHVHISLS VLVRSSDSQQ 960 QTSSWYRNEV QASLERALLN HENHGHETST STNSDTQMEQ QQRVRCNSL*

Sequence ? help Back to Top

Protein Sequence Length: 1010 aa Download sequence Send to blast

MNVAEEQRSS SLTGIISMEY HAAGASYANH HHLHRYRVES DWEEKLQALL QNWQWIDYAV  60
VWKLTHLNRP LEWSTGYFND RSLASLPNAQ RLSFSDYKSC AFTRSSYRCA VKALSQRFPL  120
WWTSDSPRLP TDEPKDQFLQ ASGIKTIVCL PGHGSDANMY CLELASRNLI MESSELLHAL  180
QNFVSGASYA FPAPQLFASN NYGAYNLLGP GGPWSSSYEE PDRSSLRVGG EGEGAAAGGG  240
GSGASAGAVV VAAQAVASGS LELVPGALSG NNLVPGGSDR RIFNPAVAGG SSTTAPPHVN  300
SIPACSFEEE ISSSSNLVGV ADPWFNAHKF GAVPVPFGSS PSVQVSSTMG TNSGDEGMVA  360
LVHHHHHHHQ QQQQQQQQEV DTVAAGLSSS TSHDGNGAET VSAEMMAHLW ASVSDTDVDV  420
EMPGISSIMS RPAFDALVMA FENDPSPTTT SFAAAAGAGA DHHMSEAAAA PPHATSTSSC  480
FDSLAVAAAA AGAYGTHADL AFHHLLQHGS QQSAASADTS CCNCSNSGFD SPSYSLPPES  540
RGAALSCCNA SSVVVPGSLS CLPADASSSH VDKLILAQRA GAPAGDRNPP AAGVTVIDQG  600
ASMNPGAPGA AGGHQAAFQE NPFHEQQQQQ ASSTEDSHVS RRNLSPFQSL EAAANRQSKH  660
PRFDEVSTTV AAEAVGVITA GSMTSAATHE SARQPMIDLW KNQLVPRIQQ SDSMQRRQPA  720
AGQQPHQPEA ELENHHHSGG SLPRTTVQQQ LARSCSSIPA EPQTSEVPSE LMNFSPGWHD  780
DQAHIAHNHK LAERDRRQKF KAKILTLRTI IPPTKKNDKL SVLSNTIEYI RELKGQVTTL  840
QKPPRIISSS LQQNLTNPVQ AAAPTVAAPG PSTSCNPIIN SNTNTSSVVV SVEVGGGSST  900
GELIIKVQAP KNPHTQTLIQ ILTQMQDLEL EIGSLSYDLS TNDHVHISLS VLVRSSDSQQ  960
QTSSWYRNEV QASLERALLN HENHGHETST STNSDTQMEQ QQRVRCNSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	6e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0026s0046.1.p