PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0025s0171.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | WOX | ||||||||
Protein Properties | Length: 336aa MW: 37079.3 Da PI: 5.5527 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 113 | 173 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+++++ ql++Le+lFe+ n +p++++++e++++l ++ e++V++WFqNr+a+ k+ Sphfalx0025s0171.3.p 113 RLRWSPSQIQLQILERLFEQgNGTPNRQHIKEITDELrqhgQIGETNVYNWFQNRKARAKR 173 67*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 92.4 | 4e-30 | 112 | 174 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r RW+P++ Q++iLe+l+++G tPn+++i++it eL+++G+i+++NV++WFQNrkaR +++ Sphfalx0025s0171.3.p 112 TRLRWSPSQIQLQILERLFEQGNGTPNRQHIKEITDELRQHGQIGETNVYNWFQNRKARAKRR 174 678**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-16 | 104 | 178 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-14 | 108 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.912 | 109 | 174 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-11 | 111 | 178 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-17 | 113 | 173 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.22E-11 | 113 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MESEAKLCKS LEFVGQQVRV QASPEGHLIP PANGSTLPQP LYASPPGQVI MTDEQLETLR 60 RQISVYATIC QQLVEMHKAS LANQPPPLPG IIIGGQHLSY DQMGTPNHKP TTRLRWSPSQ 120 IQLQILERLF EQGNGTPNRQ HIKEITDELR QHGQIGETNV YNWFQNRKAR AKRRHQQVSL 180 KDGESEAETD VDSPRQKRLR CDVEVNQNNS ETFADKNGVS SDGGNQDENE QNPGQMHHCG 240 QPEDTVTSVL LQEADIKHNI SFISGGLDPH SFTQGATESS MVKMVDDNNK PWQAPVETNG 300 VGTLLGNSVG QLIPSGVESP LLNPVHIEER YSLAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395861.1 | 7e-84 | WUSCHEL-related homeobox 8-like isoform X2 | ||||
Refseq | XP_024395862.1 | 7e-84 | WUSCHEL-related homeobox 8-like isoform X2 | ||||
Refseq | XP_024395863.1 | 7e-84 | WUSCHEL-related homeobox 8-like isoform X2 | ||||
TrEMBL | A0A2K1JDT2 | 1e-81 | A0A2K1JDT2_PHYPA; Uncharacterized protein | ||||
TrEMBL | A0A2K1K341 | 9e-82 | A0A2K1K341_PHYPA; Uncharacterized protein | ||||
STRING | PP1S224_106V6.1 | 2e-82 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-44 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0025s0171.3.p |