PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0025s0171.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

WOX

Protein Properties

Length: 302aa MW: 33579.2 Da PI: 5.9566

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0025s0171.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.3e-19	63	123	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+++++ ql++Le+lFe+ n +p++++++e++++l ++ e++V++WFqNr+a+ k+ Sphfalx0025s0171.2.p 63 RLRWSPSQIQLQILERLFEQgNGTPNRQHIKEITDELrqhgQIGETNVYNWFQNRKARAKR 123 67***************99************************************97 PP
2	Wus_type_Homeobox	92.7	3.4e-30	62	124	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r RW+P++ Q++iLe+l+++G tPn+++i++it eL+++G+i+++NV++WFQNrkaR +++ Sphfalx0025s0171.2.p 62 TRLRWSPSQIQLQILERLFEQGNGTPNRQHIKEITDELRQHGQIGETNVYNWFQNRKARAKRR 124 678**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-16	54	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-14	58	127	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.912	59	124	IPR001356	Homeobox domain
SMART	SM00389	2.0E-11	61	128	IPR001356	Homeobox domain
Pfam	PF00046	5.9E-17	63	123	IPR001356	Homeobox domain
CDD	cd00086	7.81E-11	63	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MTDEQLETLR RQISVYATIC QQLVEMHKAS LANQPPPLPG IIIGGQHLSY DQMGTPNHKP 60 TTRLRWSPSQ IQLQILERLF EQGNGTPNRQ HIKEITDELR QHGQIGETNV YNWFQNRKAR 120 AKRRHQQVSL KDGESEAETD VDSPRQKRLR CDVEVNQNNS ETFADKNGVS SDGGNQDENE 180 QNPGQMHHCG QPEDTVTSVL LQEADIKHNI SFISGGLDPH SFTQGATESS MVKMVDDNNK 240 PWQAPVETNG VGTLLGNSVG QLIPSGVESP LLNPVHIEER YSLAGGPVPS MDKSRKWAER 300 G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395861.1	8e-77	WUSCHEL-related homeobox 8-like isoform X2
Refseq	XP_024395862.1	8e-77	WUSCHEL-related homeobox 8-like isoform X2
Refseq	XP_024395863.1	8e-77	WUSCHEL-related homeobox 8-like isoform X2
TrEMBL	L8B343	3e-76	L8B343_PHYPA; WUSCHEL-related homeobox protein 13A
STRING	PP1S224_106V6.1	2e-75	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-44	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Sphfalx0025s0171.2.p