PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0025s0066.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 545aa MW: 59018.8 Da PI: 4.78 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.3 | 1.5e-27 | 213 | 267 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G ekA+P++ilelm+v++Lt+++++SHLQkYR++ Sphfalx0025s0066.1.p 213 KTKVDWTPELHRRFVQAVEQL-GVEKAIPSRILELMGVQCLTRHNIASHLQKYRSH 267 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.633 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-18 | 211 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 211 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-26 | 213 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-7 | 216 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MPTRAGGMPT TTPPHVKVVV EYEKVEILDS LISMNLSTSQ CNESNLLNAD NDHDDIEDFN 60 LEFLEQSCTK LLDCDNSLEG FHFEDDDFMR FDGEDSTREL EIDMDTCTVV DLPADTNNSR 120 CLCLDIESPL NNLVGYDGQE TEEDGVETEE IGEEEALLLA EAAKLVGDES SDRESVGPVD 180 KKEDQASSSQ CSNLKGSNKP SSCAASSSSG RRKTKVDWTP ELHRRFVQAV EQLGVEKAIP 240 SRILELMGVQ CLTRHNIASH LQKYRSHRRH MIARDVEATS WQHRRPLTWA RSQREGNAWL 300 APMMMQTGCG SSGGHSFAPV TGLPPFQPHH HHHPHLPQAH GHHHIGAPLV VWGHPTVDHS 360 PSHMWHQQQP AAAAAVNTLP FWQQPDGTFW QQQQAAAAPA SIGSWTYSSS LPPGVPSPVL 420 RAPPYASSSP PSASPGIAQM MMTPAGITSE TFFIDESTMT PGAMYQTSEH PDSAADISAA 480 AGAAACSKPC DFPPPKEILD AVISEALANP CTPLPLGLKP PSAAGVMAEL CRQGIFNVVA 540 PSIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-16 | 209 | 265 | 1 | 57 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-45 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0025s0066.1.p |