PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0024s0104.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 432aa MW: 49949.3 Da PI: 6.6924

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0024s0104.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00089	21	40	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0024s0104.1.p 21 CSTCGPSFEDMAKYSSHLRK 40 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	2.1E-10	1	61	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	19	51	IPR007087	Zinc finger, C2H2
Pfam	PF13960	3.2E-36	256	370	IPR025452	Domain of unknown function DUF4218

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MHDYPGFGFV SGLQTQGYKA CSTCGPSFED MAKYSSHLRK IVYLGHTKFL PLGHDMRSDP 60 LLFSSFDMPY GDERDILKAT TFAYWRDVAN RVIDPNDSMV FEGSGLTRWG ILNSLPYWGE 120 LKIRHLLDPM HIEGNVGKAI IKQLYGEKDS NFNREACEDF ERHPDVWITV DPNTGIEQRP 180 SAPWTLTTHE RRDFRNRIGE MRFPTGYGAN LQKAFGRDDD HKWPRYLKTH DYHRLLQHIL 240 PVAIMGLASV EVQDVLWSLG NMLRWVCSKE LFVKEIPRMR VIAAEVVCKL EKAFPPSLFD 300 YQVHLLVHLV DEIAIAGPVH CRWMYWLERY MAVLKCYVRN HARVEGSMAA GHLAAESMFY 360 CTNILATIDP SCPHVWMEER EEEEDRLTGA IKTRMLLPTE LIQLTTFMLN NSNVMEEWRN 420 FYENAKSMSG R*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MHDYPGFGFV SGLQTQGYKA CSTCGPSFED MAKYSSHLRK IVYLGHTKFL PLGHDMRSDP  60
LLFSSFDMPY GDERDILKAT TFAYWRDVAN RVIDPNDSMV FEGSGLTRWG ILNSLPYWGE  120
LKIRHLLDPM HIEGNVGKAI IKQLYGEKDS NFNREACEDF ERHPDVWITV DPNTGIEQRP  180
SAPWTLTTHE RRDFRNRIGE MRFPTGYGAN LQKAFGRDDD HKWPRYLKTH DYHRLLQHIL  240
PVAIMGLASV EVQDVLWSLG NMLRWVCSKE LFVKEIPRMR VIAAEVVCKL EKAFPPSLFD  300
YQVHLLVHLV DEIAIAGPVH CRWMYWLERY MAVLKCYVRN HARVEGSMAA GHLAAESMFY  360
CTNILATIDP SCPHVWMEER EEEEDRLTGA IKTRMLLPTE LIQLTTFMLN NSNVMEEWRN  420
FYENAKSMSG R*

Link Out ? help Back to Top
Phytozome	Sphfalx0024s0104.1.p