PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0024s0069.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 2122aa    MW: 229884 Da    PI: 7.4584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0024s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0514741497123
                            EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2    1 ykCpdCgksFsrksnLkrHirt.H 23  
                            + C++Cgk F  +++L rH+r  H
  Sphfalx0024s0069.1.p 1474 FICTYCGKIFHKSDELGRHQRAvH 1497
                            89*******************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551613081331IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013101331IPR007087Zinc finger, C2H2
SMARTSM003551213421365IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013441365IPR007087Zinc finger, C2H2
SMARTSM003551.413761399IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013781399IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.94614741502IPR007087Zinc finger, C2H2
SMARTSM003550.004414741497IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.62E-514741497No hitNo description
Gene3DG3DSA:3.30.160.603.2E-414741494IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014761497IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-516081632No hitNo description
SMARTSM003550.04316131636IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.16216131641IPR007087Zinc finger, C2H2
PROSITE patternPS00028016151636IPR007087Zinc finger, C2H2
SuperFamilySSF821994.32E-7318122111No hitNo description
Gene3DG3DSA:2.170.270.101.6E-8118122120No hitNo description
SMARTSM004682.0E-418181951IPR007728Pre-SET domain
PfamPF050331.9E-918221959IPR007728Pre-SET domain
PROSITE profilePS508678.80818881964IPR007728Pre-SET domain
PROSITE profilePS5028018.04519672098IPR001214SET domain
SMARTSM003173.8E-3919672104IPR001214SET domain
PfamPF008561.1E-2119782097IPR001214SET domain
SMARTSM005080.00921052121IPR003616Post-SET domain
PROSITE profilePS508689.80621052121IPR003616Post-SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006342Biological Processchromatin silencing
GO:1900109Biological Processregulation of histone H3-K9 dimethylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2122 aa     Download sequence    Send to blast
MSLLKLLFEL PDAGGQCNFT MEEQEDLIAF EQNLDQEDFV ANFELPETHT QLAFLQDGGS  60
GTRQVNEVQT LDLHAANVGE IQKGFVKGWD DDDVGSLQHN EQLQSVANEI PNGFGKDGGG  120
GKNVAAAAVA ALHQDNQQKV RNLKVPIESE VHIAGLKNNN KDHVGVLGHQ MKQVDSSSLY  180
NHDESSSRCG TTAEPSWVHS EEMEKTICGG TANDKSAVPL DSKKQFANLK HAETGHPLWI  240
KWRGKWQTAI QCHIEDCRMA TVKAKPTYGK KKYIVVYMVR TRMYLWVDEQ NVCPLTENPS  300
PLVSGYHLEW REMVAADTGA PRRRLFLSLG WDMLDISDRL HILGVIERAR CVDVWKGFVK  360
EATEAFMYSD LGGLLVRIQA VIEPLYVRRS WVDGRLTSWT HECLTAISAA TIEKLTKELI  420
KAILWDSAAS LWEIPVPPEL EVEWTDWKGD AFDELTKTDS GVAAAALPVD SSSVQQPPLT  480
SSNPKIEQGS SNLSWSRMTQ MPEGNGKVVQ QQDRTPQKEL KLDKLSDMIP SSTATVKERL  540
ISLSVPDAAF VPPQSSTTPS VPELRAKTNS LLNGTPGATT FTTTLPPKSS LNSSAPHPPS  600
SAPHPPSAPH PPSSTPHPLS SAAHPPSSAA HLPSSASHPP SSVHHPLPSS AAAHAPSCKR  660
KADSWGCSAY LKSRKRRCRQ EAQVGIYCQK HQGLAVNPVS PDPNVVPSYL CMARLDRVEN  720
RRCAKPMMKG SLFCDLHILS PPENPGLKKV AAAGGTACSS SSSVAAAAPL PGPGQKAAPG  780
LTSSASAAPP LTRPGLKNAG LTSSSSAAAP LTGPGLKAAG LTSSFSAVAP LTGPGLKAAG  840
LTSSSSAVAP LTGPGLQAAG LTSSSAVAPL TGPGLQAAGL TSSSSAVAPL TGPGLKAAGL  900
TSSSAVAPLT GPELKPAGTS PFLAAPLSGP GLKGAGTSSS SSAPVLPDPE DEKDGGDMKE  960
GGVISISKPG VLNIQCIGKT ASGSQCTHVV KDGSLYCMQH GIQETERVRG EKPPLVVVAA  1020
TTTSDGGGGQ VVGLNNSNTT GEQQSQQQGQ QQQPQMSSSS AEPRCMGRTR RFEECLRRAK  1080
SGSKYCEKHV RGSSLSSSSA AAGACGGGGV VGENNVWFFC DGISSIPMNE ATLGINLQKD  1140
RRNLLRAQDL LCRYLAAGVE NDGYDANHHC KLVDSIVEEA IKDARAAEVL LKILSLEKER  1200
LHELVLVKEE EQVPTVKEEK KFFFWGDSRG NTTTTTTTTT TTTTTMMTTT RDCVAQTIAT  1260
PSTHRLEEGQ TSAVGAEDCR LPTPPSTQVS FLQGTDKEVD TTTLGFGVTC GLCADRFEQL  1320
SLLGRHWMER HKWEAYQFQK CLSCHVCGEI LADRMQLLSH GKSAHPSDPI SALGWSICVV  1380
CDKQFMNFDH LWQHVEDQHS PHWRNAEFAA QIVSVRPLAG HQKVMMAKKE QAMRDFDTKG  1440
VLINNLRNEL KGKKDAAVHV KLSEMMSPCT SNEFICTYCG KIFHKSDELG RHQRAVHKDL  1500
VESKLLSNSL GTQNIRKQDA AVQPNNNNGK LKWRHRARAK AKNISRTNVV PMKNQSSGGG  1560
AKAILQRMKA MKQVLDDHHS TNPIKGVLTR KQHAEVMRKN LVSNQPNGAA LKYQCRFCGL  1620
RFPLLPDLGR HHQEKHLTVK QAFITNGLGE PQTGMYMLSK DGVLMPSKPN NKLLSSPDSK  1680
EILDVARFAC CKTWLYNELG KRYVDLPPRL GVQAAHLCSV AKVEIRWHID GYVCPEGCKE  1740
YSELREAVKV PSVEVDLIGL SLHFPAVLDA TNADQEMNAD IQAPTLVNST DQETGLVKSN  1800
ENMMMSVVNG APKSLVLLED LSNGQEQVPI VCVVDRDTIE PCTCSLCIEN AKSGPPNMDA  1860
LRPWDTFVYG TKRLLDPSLG LDTKDSRLGC SCGTEGCAPH SCDHVSMFDN DNTEAQDIHG  1920
QSMRGRFPYD NFGRIIVEEG YMVYECNSSC RCREDCENRI LQKGVRVKLE VFKSRHKGWG  1980
VRAGEPIARG TFVCEYVGEV LNDQEANKRG ERYDQVGCSY LYDIDAHLDI TGARVASKPF  2040
VIDATKYGNV ARFINHSCAP NLINYEVLVE SMDCQLAHIG FFANRDIVMG EELAYNYRYK  2100
LLRGKGCPCH CGAPNCRGRL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fpd_A5e-47181621174259Histone-lysine N-methyltransferase, H3 lysine-9 specific 5
3fpd_B5e-47181621174259Histone-lysine N-methyltransferase, H3 lysine-9 specific 5
5tuz_A5e-47181621174259Histone-lysine N-methyltransferase EHMT1
5tuz_B5e-47181621174259Histone-lysine N-methyltransferase EHMT1
5vsd_A5e-47181621174259Histone-lysine N-methyltransferase EHMT1
5vsd_B5e-47181621174259Histone-lysine N-methyltransferase EHMT1
5vsf_A5e-47181621174259Histone-lysine N-methyltransferase EHMT1
5vsf_B5e-47181621174259Histone-lysine N-methyltransferase EHMT1
6mbo_A5e-47181621174259Histone-lysine N-methyltransferase EHMT1
6mbo_B5e-47181621174259Histone-lysine N-methyltransferase EHMT1
6mbp_A5e-47181621174259Histone-lysine N-methyltransferase EHMT1
6mbp_B5e-47181621174259Histone-lysine N-methyltransferase EHMT1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1658676KRKADSWGCSAYLKSRKRR
2670676LKSRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-