PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0023s0160.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1274aa MW: 143159 Da PI: 4.8543 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.3e-08 | 1250 | 1273 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C+++a+ G+Ck+G++C F H+ Sphfalx0023s0160.2.p 1250 KDVPCKYYAQ-GYCKRGETCVFRHS 1273 6789******.***********996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 2.9E-10 | 215 | 273 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 4.21E-9 | 216 | 273 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.564 | 219 | 285 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 8.8E-8 | 221 | 267 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 1.13E-19 | 221 | 266 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 222 | 282 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.245.10 | 7.3E-17 | 490 | 568 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF47592 | 9.59E-15 | 490 | 564 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 0.002 | 498 | 567 | IPR019835 | SWIB domain |
Pfam | PF02201 | 4.8E-12 | 507 | 563 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 1.4E-38 | 625 | 735 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 2.22E-26 | 625 | 745 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 22.399 | 625 | 758 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 5.6E-22 | 630 | 733 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.44E-15 | 1012 | 1069 | IPR003169 | GYF domain |
CDD | cd00072 | 1.77E-14 | 1016 | 1073 | No hit | No description |
PROSITE profile | PS50829 | 14.493 | 1016 | 1070 | IPR003169 | GYF domain |
SMART | SM00444 | 1.6E-14 | 1017 | 1072 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 3.0E-16 | 1018 | 1070 | IPR003169 | GYF domain |
Pfam | PF02213 | 2.8E-12 | 1019 | 1062 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 15.018 | 1248 | 1273 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 1249 | 1273 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 1250 | 1273 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 1252 | 1273 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1274 aa Download sequence Send to blast |
MLATCFTGRR DAMATEKTSF LLDEEAGSIT TAIAAAAVVP TLIAQTANDD DDDVVVRDSF 60 PDNTNKAIID KAELEEESVR DADGSGQQTM HRDEEEANLK GENQTAEEAE QDMAEEQKTD 120 AAAAAAVIKV EKTDQEKEDA EEMSEALRVE GDQATLEHQQ QQRDGVPNGE LKMVKEPAAA 180 AYQNDKKRVQ GLVQERQKKQ CRRGGGHATT IDERKKDEED VCYICFDGGD LVMCDRRSCP 240 KAYHLNCIGR DAAFFKKKGA WICGWHFCSS CTKPGSFQCY TCPIAYCGSC VKEANFFMLR 300 KRKGLCEECL PIVIMIEHNQ TVNSEGVEVD FEDKETYEFL FKEYWLGLKN RLSLTMPELD 360 KDGKPANENH ADSENGGSDT ENQDPSDVDE LGTESDRAVE ESDEDGDETL DGRKWKRKKI 420 KVAPTFGDLV VVNQADTFTE GGEHKEEEED EDKKEEEEDD NDDNYDDDDD DDDDDVADVS 480 DIPSRKIEDW ASKEVLDFVI HMKGDPMKPL TRFAVNHLLW SYIKQHQLQD PGKKINCDER 540 LQVIFGKKLL GQSEMYRQLK EHFPLKESVS AAKSSKEADR IVKDEAREAD GAEDKLDRAT 600 VKDKRRGRRR SDEKFERPDG NDFAAITPKN INLIYLRRSL LEDLLDDPEF DSKVVDTFVK 660 IRVPGNASTL DTCYRLVLIT GTRLQTEFYK AGRKLTNIVL DILNLQKKEE LTIDLVSNQD 720 FSEEECQRLR QSIKCGFLKT LTVWFETERQ RLVNLRDRAS EKGRKKELRE CVEKLQELSN 780 PAFRAAKLQA RPEVSADPQM GLGYESDASD DKPVTDGFSN HQTKVSPGIS WEKGSVAPYN 840 RRDSSAVEDS SFGGRKGDWD SHRYKPYSTR GSNGSRDWVQ KGHETGRSSE KSFGHDTNSS 900 QEKSSWHEQR GGGRDWTKDH RDYVQEQQND QGGAENWKAT GKSRSDHWGG DSIGSKFAKD 960 EFRTPIFDQP KLNTGSLQRE PVGPASTVLL PLSNIRVTSP ERSVLSQADL DIMEREKVWH 1020 YQDPTGTSQG PFSMEQLRKW NTTGLFPVDL RIRRTGQTHE NSILLTNALA GRFAEERGPW 1080 TSNIVTGLQS SNRDRAGGSS ISGLGEGRVS TWGVGRGIGD DRRWDAKQDD LDVPSRTAHW 1140 GTRDPDAVYD RSNSWPQARN NSYGSSPSAT GRADDCGPLR SRGDNDSWAP QRLAGGSRER 1200 SLQDIGISAG RSGWARYSGR DSSNTGSWNE DSGSRDRSYP SERSSRASKK DVPCKYYAQG 1260 YCKRGETCVF RHS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 6e-16 | 213 | 287 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 6e-16 | 213 | 287 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 6e-16 | 213 | 287 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 6e-16 | 213 | 287 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 6e-16 | 213 | 287 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 6e-16 | 213 | 287 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6W488 | 0.0 | A0A2R6W488_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16485.1 | 3e-54 | nucleic acid binding;zinc ion binding;DNA binding |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0023s0160.2.p |