PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0160.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1291aa    MW: 144939 Da    PI: 4.8446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-0812671290226
                            -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                            k ++C+++a+ G+Ck+G++C F H+
  Sphfalx0023s0160.1.p 1267 KDVPCKYYAQ-GYCKRGETCVFRHS 1290
                            6789******.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.9E-10215273IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.21E-9216273IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.564219285IPR019787Zinc finger, PHD-finger
SMARTSM002498.8E-8221267IPR001965Zinc finger, PHD-type
CDDcd155689.37E-20221266No hitNo description
PROSITE patternPS013590222282IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475929.81E-15490564IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.107.4E-17490568IPR003121SWIB/MDM2 domain
SMARTSM001510.002498567IPR019835SWIB domain
PfamPF022014.8E-12507563IPR003121SWIB/MDM2 domain
SMARTSM007191.4E-38625735IPR004343Plus-3 domain
SuperFamilySSF1590421.7E-29625756IPR004343Plus-3 domain
PROSITE profilePS5136026.653625758IPR004343Plus-3 domain
PfamPF031265.7E-22630733IPR004343Plus-3 domain
SuperFamilySSF552771.44E-1510291086IPR003169GYF domain
PROSITE profilePS5082914.49310331087IPR003169GYF domain
CDDcd000721.57E-1410331090No hitNo description
SMARTSM004441.6E-1410341089IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.0E-1610351087IPR003169GYF domain
PfamPF022132.9E-1210361079IPR003169GYF domain
PROSITE profilePS5010315.01812651290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-612661290IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-512671290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-412691290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1291 aa     Download sequence    Send to blast
MLATCFTGRR DAMATEKTSF LLDEEAGSIT TAIAAAAVVP TLIAQTANDD DDDVVVRDSF  60
PDNTNKAIID KAELEEESVR DADGSGQQTM HRDEEEANLK GENQTAEEAE QDMAEEQKTD  120
AAAAAAVIKV EKTDQEKEDA EEMSEALRVE GDQATLEHQQ QQRDGVPNGE LKMVKEPAAA  180
AYQNDKKRVQ GLVQERQKKQ CRRGGGHATT IDERKKDEED VCYICFDGGD LVMCDRRSCP  240
KAYHLNCIGR DAAFFKKKGA WICGWHFCSS CTKPGSFQCY TCPIAYCGSC VKEANFFMLR  300
KRKGLCEECL PIVIMIEHNQ TVNSEGVEVD FEDKETYEFL FKEYWLGLKN RLSLTMPELD  360
KDGKPANENH ADSENGGSDT ENQDPSDVDE LGTESDRAVE ESDEDGDETL DGRKWKRKKI  420
KVAPTFGDLV VVNQADTFTE GGEHKEEEED EDKKEEEEDD NDDNYDDDDD DDDDDVADVS  480
DIPSRKIEDW ASKEVLDFVI HMKGDPMKPL TRFAVNHLLW SYIKQHQLQD PGKKINCDER  540
LQVIFGKKLL GQSEMYRQLK EHFPLKESVS AAKSSKEADR IVKDEAREAD GAEDKLDRAT  600
VKDKRRGRRR SDEKFERPDG NDFAAITPKN INLIYLRRSL LEDLLDDPEF DSKVVDTFVK  660
IRVPGNASTL DTCYRLVLIT GTRLQTEFYK AGRKLTNIVL DILNLQKKEE LTIDLVSNQD  720
FSEEECQRLR QSIKCGFLKT LTVGQLEAKA IALQEAKVND WFETERQRLV NLRDRASEKG  780
RKKELRECVE KLQELSNPAF RAAKLQARPE VSADPQMGLG YESDASDDKP VTDGFSNHQT  840
KVSPGISWEK GSVAPYNRRD SSAVEDSSFG GRKGDWDSHR YKPYSTRGSN GSRDWVQKGH  900
ETGRSSEKSF GHDTNSSQEK SSWHEQRGGG RDWTKDHRDY VQEQQNDQGG AENWKATGKS  960
RSDHWGGDSI GSKFAKDEFR TPIFDQPKLN TGSLQREPVG PASTVLLPLS NIRVTSPERS  1020
VLSQADLDIM EREKVWHYQD PTGTSQGPFS MEQLRKWNTT GLFPVDLRIR RTGQTHENSI  1080
LLTNALAGRF AEERGPWTSN IVTGLQSSNR DRAGGSSISG LGEGRVSTWG VGRGIGDDRR  1140
WDAKQDDLDV PSRTAHWGTR DPDAVYDRSN SWPQARNNSY GSSPSATGRA DDCGPLRSRG  1200
DNDSWAPQRL AGGSRERSLQ DIGISAGRSG WARYSGRDSS NTGSWNEDSG SRDRSYPSER  1260
SSRASKKDVP CKYYAQGYCK RGETCVFRHS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A5e-16213287980Histone-lysine N-methyltransferase NSD3
4gnd_C5e-16213287980Histone-lysine N-methyltransferase NSD3
4gne_A5e-16213287980Histone-lysine N-methyltransferase NSD3
4gnf_A5e-16213287980Histone-lysine N-methyltransferase NSD3
4gng_A5e-16213287980Histone-lysine N-methyltransferase NSD3
4gng_D5e-16213287980Histone-lysine N-methyltransferase NSD3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396631.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396632.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396633.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396634.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396635.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396636.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396637.10.0zinc finger CCCH domain-containing protein 19-like
TrEMBLA0A2K1JCZ00.0A0A2K1JCZ0_PHYPA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.13e-63nucleic acid binding;zinc ion binding;DNA binding