PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0153.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 559aa    MW: 59601.3 Da    PI: 5.1884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0153.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11482527655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR +i +++ +L++l+P+     +k  + +++L +AveY+k+Lq
  Sphfalx0023s0153.1.p 482 SIAERVRRTKISERMKRLQDLVPNM----DKQTNMSDMLDEAVEYVKQLQ 527
                           689*********************7....5779999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488476526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16479542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-12480531No hitNo description
Gene3DG3DSA:4.10.280.107.5E-17481542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8482527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-13482532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAGMSQVDEE LSAMLQSDLH QSPAQTTLAS VMSSPAGMVL GPGSEHMDSS TFSSHYSSSL  60
EGGGLISSSS SGGSHGRQQL LVPPTVRGAT NLSSVEVAAS SHVLSLAAAA GPVQCSRPME  120
QQQLLWPFIA ADQKLLELQD PATKNQDFMK KAVNSQVVNF STSLLDATSM SLQDLNPPPP  180
QFSSRGGLQR YHSAPSSLLR SLAADCNNED VLGFSSHQVS SPLGNNTGNI RDDTRGRSLI  240
PPFFSGAGNN NNNLTSITEC VVQPMETDKM LNDSTLHQYD RFLSPATKSN KRASLVTTTS  300
MLAGKSDSKP ADLFGNQPQL GNDNLLRQSS LPADWFAALQ GSIDDTDPSS QMPSMTSPDE  360
SLSGRTSEDT AGVGASGKSS IYSRDDSFLV IDTTSGGLWD SPTSPVGHIG GKRLRGILGD  420
ATIDTGEGLQ RDRLGGPGTL IRHTSLPANF NRPTIPVLDD LADISVPCQT RAKRGCATHP  480
RSIAERVRRT KISERMKRLQ DLVPNMDKQT NMSDMLDEAV EYVKQLQQQV QDLSDTVAQL  540
RDLQAKGLKT EDNGSSEV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-35bHLH family protein