PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0023s0146.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

WRKY

Protein Properties

Length: 666aa MW: 70973 Da PI: 6.6635

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0023s0146.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.1	7.9e-33	371	429	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vk+s++prsYYrCts++Cpv+k+versaed+ +v++tYeg+Hnh Sphfalx0023s0146.1.p 371 MEDGYKWRKYGQKAVKNSPHPRSYYRCTSPKCPVRKRVERSAEDTGLVITTYEGTHNHV 429 58********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-35	356	431	IPR003657	WRKY domain
SuperFamily	SSF118290	9.68E-29	363	429	IPR003657	WRKY domain
PROSITE profile	PS50811	31.468	366	431	IPR003657	WRKY domain
SMART	SM00774	5.3E-38	371	430	IPR003657	WRKY domain
Pfam	PF03106	8.7E-26	372	428	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MAMGGAHENE LDRLIRALGE DNVPLGSQQQ QQLFVNPPPL REVNNAFLMQ QQQGQGGFAS 60 FADELLLHPL AVPSPTAQWH NLLLSSSNSS SSDHTAASGG GSGPSSSAAS LPSSTGFFLH 120 QLQNELLSDP IADFSSASAA WGFGDNQITP RIGNFGQANY DAIQELLNTP ISSTVLPSSR 180 NQQFAAGHHQ APLLGQQQQQ LVDDADFYNT RQAASSSSSQ QQTMMQQQFH SPSPPPSAVG 240 SLSPVLTSPS PSSMTTTTHG GRRSPSPARL PASAASTLPS TPNSSFSSGS FSDGPEDDAS 300 KLPASSSAAA AAAGPSASTS KRKTPDRAMD ESEEIQSPEL KKPSNKPRKK GLKRVREPRY 360 AIQTRSEVEI MEDGYKWRKY GQKAVKNSPH PRSYYRCTSP KCPVRKRVER SAEDTGLVIT 420 TYEGTHNHVN PAVSSRNSSS DAPPALPASG ENRPGGAAYQ PPPPTSSFPF TSLNSSVLPL 480 RSHYDLTVQI QAGAQTDHIS VTSRLSPQAQ EVQQQTGASA NGVGSGLQSL NIQEPSFLRG 540 HGSLQEFNPS VQELSILRHH QQQQQPQLSG AQNQMQVQNS NEGQMLRSED NFGAQLGMFG 600 SNTNDLLRGF PIPSFWTTSN NTEPPSSAAR GVGGMVAATE DDSVRDQSPV NEGLLGDVVR 660 LGLRW*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MAMGGAHENE LDRLIRALGE DNVPLGSQQQ QQLFVNPPPL REVNNAFLMQ QQQGQGGFAS  60
FADELLLHPL AVPSPTAQWH NLLLSSSNSS SSDHTAASGG GSGPSSSAAS LPSSTGFFLH  120
QLQNELLSDP IADFSSASAA WGFGDNQITP RIGNFGQANY DAIQELLNTP ISSTVLPSSR  180
NQQFAAGHHQ APLLGQQQQQ LVDDADFYNT RQAASSSSSQ QQTMMQQQFH SPSPPPSAVG  240
SLSPVLTSPS PSSMTTTTHG GRRSPSPARL PASAASTLPS TPNSSFSSGS FSDGPEDDAS  300
KLPASSSAAA AAAGPSASTS KRKTPDRAMD ESEEIQSPEL KKPSNKPRKK GLKRVREPRY  360
AIQTRSEVEI MEDGYKWRKY GQKAVKNSPH PRSYYRCTSP KCPVRKRVER SAEDTGLVIT  420
TYEGTHNHVN PAVSSRNSSS DAPPALPASG ENRPGGAAYQ PPPPTSSFPF TSLNSSVLPL  480
RSHYDLTVQI QAGAQTDHIS VTSRLSPQAQ EVQQQTGASA NGVGSGLQSL NIQEPSFLRG  540
HGSLQEFNPS VQELSILRHH QQQQQPQLSG AQNQMQVQNS NEGQMLRSED NFGAQLGMFG  600
SNTNDLLRGF PIPSFWTTSN NTEPPSSAAR GVGGMVAATE DDSVRDQSPV NEGLLGDVVR  660
LGLRW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-26	359	431	2	74	WRKY transcription factor 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	7e-35	WRKY DNA-binding protein 57

Link Out ? help Back to Top
Phytozome	Sphfalx0023s0146.1.p