PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0127.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 703aa    MW: 73390.2 Da    PI: 6.89
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37e-07451472223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C++Cgk F+r  nL+ H+r H
  Sphfalx0023s0127.1.p 451 FCEICGKGFKRDANLRMHMRGH 472
                           6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.24E-6446474No hitNo description
SMARTSM003550.0026450472IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.113450477IPR007087Zinc finger, C2H2
PfamPF128743.6E-4451472No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5452476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280452472IPR007087Zinc finger, C2H2
SMARTSM0035578500533IPR015880Zinc finger, C2H2-like
SMARTSM0035531538560IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MMQQGGDQGD SRNTRLGQQQ MKQQQSAAAA SPQQQQQQQH QNQTVHAAAA ASLSFSLGGN  60
GSNSQGQQVH SQHPQQQQQQ QQQQHSLSLW QQLLTHNTGD HGNELHRGHP HVFHNLEQVP  120
DVGEGFSQLQ QFGRQQQLAS HGLPHNGTNL FMGGGGRGLS MQALMNGLAV LHQKVQQLQA  180
LVPLMVDSGH VQSNTAGGVT MQQHAATAVM SILSQLAGTA TGMLPQHLLI QQSHQPSDLE  240
LSQFLAAGDN SNSNHVPQSG GLGCQMGMSP GSSLGNLLGN NMLGNSYSTA GGLGVHGDGG  300
EQGGGGQENC GLGFANGGGA VSSASRGGVE LSDQDHLGDH QVSGGVGPSG VILHNQMTTA  360
AHEKPDENRF GFGGSVAVNR MSDVADNLLG VGGGMSTVGP HESRGMSGSM DEHDDGMGAD  420
EDDGVSESLP PGSYDLVEID AMEIMAEHTH FCEICGKGFK RDANLRMHMR GHGDEYKTLA  480
ALAKPEKTSQ GTSVIQPRRF SCPYAGCKRN KKHSKFLPLK TMLCVKNHYR RSHCPKMLVC  540
SKCKSKKFSV LADLKTHEKH CGRNKWQCSC GTTFSRKDKL FGHIGLFAGH TPAVPLHEME  600
SVNGVDASGG GFGAGNGCAD GFMLGSEGAR TSGSSGIGSG TGSEMGLGSG MGLRIGGGGL  660
QSLDSKDDSG GLTLSDDGGG GLFTNNFLQS PRSGNSASDG LH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373732.11e-118uncharacterized protein LOC112281445
RefseqXP_024373733.11e-118uncharacterized protein LOC112281445
RefseqXP_024373734.11e-118uncharacterized protein LOC112281445
RefseqXP_024373735.11e-118uncharacterized protein LOC112281445
RefseqXP_024373736.11e-118uncharacterized protein LOC112281445
RefseqXP_024373737.11e-118uncharacterized protein LOC112281445
TrEMBLA0A2K1KNZ41e-116A0A2K1KNZ4_PHYPA; Uncharacterized protein
STRINGPP1S13_145V6.11e-118(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-87C2H2 family protein