PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0023s0100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 25639.7 Da PI: 8.381 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.4 | 8e-46 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++l++++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++q Sphfalx0023s0100.2.p 9 PCAACKFLRRKCTSECVFAPYFPPDQPQKFANVHKIFGASNISKLLNELSPHQREDAVNSLAYEADARVKDPVYGCVGAISLLQRQVAQ 97 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l++ela +++ Sphfalx0023s0100.2.p 98 LQNELAIAHSD 108 ******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.276 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-44 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MASSSSSSPC AACKFLRRKC TSECVFAPYF PPDQPQKFAN VHKIFGASNI SKLLNELSPH 60 QREDAVNSLA YEADARVKDP VYGCVGAISL LQRQVAQLQN ELAIAHSDLA RYSSAGAACG 120 PMQQLAVGVP PHQGPQAGAG HSSSLQGIAM VLPQGNQSRG EQQAAQLLTR EQLIDLAREP 180 PQLTREQIME LARVGGGSYD AGLAALGLQS HGARAHGPLA GSYSSSRTGG AGGDHSGGGG 240 RRTSPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-60 | 8 | 130 | 10 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-60 | 8 | 130 | 10 | 127 | LOB family transfactor Ramosa2.1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356367.1 | 7e-93 | protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Refseq | XP_024356368.1 | 5e-93 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Refseq | XP_024356369.1 | 5e-93 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Refseq | XP_024356370.1 | 5e-93 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Refseq | XP_024356371.1 | 5e-93 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
TrEMBL | A0A2K1IZ19 | 2e-91 | A0A2K1IZ19_PHYPA; Uncharacterized protein | ||||
STRING | PP1S170_93V6.1 | 3e-92 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-61 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0023s0100.2.p |