PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0100.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 247aa    MW: 25639.7 Da    PI: 8.381
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.48e-4691081100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++l++++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++q
  Sphfalx0023s0100.1.p   9 PCAACKFLRRKCTSECVFAPYFPPDQPQKFANVHKIFGASNISKLLNELSPHQREDAVNSLAYEADARVKDPVYGCVGAISLLQRQVAQ 97 
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l++ela +++ 
  Sphfalx0023s0100.1.p  98 LQNELAIAHSD 108
                           ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2768109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-449106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASSSSSSPC AACKFLRRKC TSECVFAPYF PPDQPQKFAN VHKIFGASNI SKLLNELSPH  60
QREDAVNSLA YEADARVKDP VYGCVGAISL LQRQVAQLQN ELAIAHSDLA RYSSAGAACG  120
PMQQLAVGVP PHQGPQAGAG HSSSLQGIAM VLPQGNQSRG EQQAAQLLTR EQLIDLAREP  180
PQLTREQIME LARVGGGSYD AGLAALGLQS HGARAHGPLA GSYSSSRTGG AGGDHSGGGG  240
RRTSPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-60813010127LOB family transfactor Ramosa2.1
5ly0_B2e-60813010127LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356367.17e-93protein LATERAL ORGAN BOUNDARIES-like isoform X1
RefseqXP_024356368.15e-93protein LATERAL ORGAN BOUNDARIES-like isoform X2
RefseqXP_024356369.15e-93protein LATERAL ORGAN BOUNDARIES-like isoform X2
RefseqXP_024356370.15e-93protein LATERAL ORGAN BOUNDARIES-like isoform X2
RefseqXP_024356371.15e-93protein LATERAL ORGAN BOUNDARIES-like isoform X2
TrEMBLA0A2K1IZ192e-91A0A2K1IZ19_PHYPA; Uncharacterized protein
STRINGPP1S170_93V6.13e-92(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.14e-61LOB domain-containing protein 25