PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0023s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 494aa MW: 54324.7 Da PI: 4.9122 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.7e-18 | 131 | 184 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k Sphfalx0023s0046.1.p 131 KKRRLTFEQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 184 5668999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.8 | 2.9e-38 | 131 | 222 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrl+ eqv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye L + y +lk+e e+ +e+e+L++e Sphfalx0023s0046.1.p 131 KKRRLTFEQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYELLSSDYSRLKAEFEATVQEKERLKSE 219 9***************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 +++ Sphfalx0023s0046.1.p 220 VQR 222 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.3E-19 | 115 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.54 | 126 | 186 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-15 | 129 | 190 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.60E-16 | 131 | 187 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 131 | 184 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 132 | 193 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 157 | 166 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 161 | 184 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 166 | 182 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-14 | 186 | 226 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MKTIQFRAEI AATNAMQRAT GFGAQNATLA QKETFPADST FVAMLASCSN MYQLQVPGGV 60 VGGSLEDAVV GCGQKRPSSF LYPTSFDTPP AAAAVAGEED QAGDVDQDGS DEYYCSGGHN 120 NNNNNAVESS KKRRLTFEQV RSLERNFELE NKLEPERKMQ LAKELGLQPR QVAVWFQNRR 180 ARWKTKQLER DYELLSSDYS RLKAEFEATV QEKERLKSEV QRLSGKNELL FPPRSCVDAG 240 VDQPSHPSGS RSPADQTTSN DHHHAQHVNS GLPSIKLEKD RLQLLSDQQH LVEPDSRLLH 300 SQIWRPSSPS CTAVDPTATT SAQKGDQTSQ QEEEEQSTSA ADSNSSNSSE ILNTDSPRTA 360 VHRYKVLSSG IIAANLEQQL QKSTCNDVAI CCPRPTLTPD GNFLQQQQDH LPPGGDSCLR 420 ALVSCSGDDD DLGAATASPQ VLHQQRPSTS PYHVINLEAD GNSYQTDDHP SCNYFLSQLD 480 EKAAMQPWWL DWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 186 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-38 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0023s0046.1.p |