PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0023s0043.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 446aa MW: 48000.1 Da PI: 8.162 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.5e-18 | 267 | 321 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq ++Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Sphfalx0023s0043.1.p 267 RKKLRLSKEQSTILEESFKEHSTLNPKQKNTLARQLDLRPRQVEVWFQNRRARTK 321 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.6e-39 | 267 | 356 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LEesF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d l+ en+rL+ke +eL+ Sphfalx0023s0043.1.p 267 RKKLRLSKEQSTILEESFKEHSTLNPKQKNTLARQLDLRPRQVEVWFQNRRARTKLKQTEVDCERLKRCCDCLALENRRLQKELHELK- 354 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 ++ Sphfalx0023s0043.1.p 355 AV 356 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-17 | 246 | 321 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.84E-18 | 257 | 324 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 263 | 323 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-13 | 266 | 327 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.75E-16 | 267 | 324 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 267 | 321 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 298 | 321 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.0E-9 | 323 | 356 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.5E-15 | 323 | 366 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MATLAEGKDA IREEMVKLSW AMMQQANYSG PPVSLGAAGS VSKNLSLKLQ QQPTISAAVA 60 ASAMEDVHDI TAAAVISNNA SAGVTITPAP RKQFPVQLNL LPPLPCPSSV QSPSKSSSAM 120 SPQLPYPSCS SKYSFPMTWQ HPAISLDRSD NAARLETVVV EAACYSSGTQ ALLQGAAASP 180 LRDMIDVNQV PASVGNSCED ESLVDVQSSP GSSSGLKRER ASSMQQHNMN MFDLLEQRDS 240 PCEISSRAAG SDDEELERLA GGTSYTRKKL RLSKEQSTIL EESFKEHSTL NPKQKNTLAR 300 QLDLRPRQVE VWFQNRRART KLKQTEVDCE RLKRCCDCLA LENRRLQKEL HELKAVKAVA 360 SISSAPAAGR GGGTHMSQQQ QQQQDYSSYS RPLLPAAATL TMCPSCERVA TVADNRAAHT 420 SNNFTKPAPA PAFSPHLVQS SAACS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 271 | TRKKLRL |
2 | 315 | 323 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | P46602 | 7e-50 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-49 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0023s0043.1.p |
Publications ? help Back to Top | |||
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