PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0041.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 325aa    MW: 35183.8 Da    PI: 6.1102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.2e-1584133155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h  +Er+RR+++N++f+ Lr ++Pka     +K +Ka+i+  +++Y+ +L+
  Sphfalx0023s0041.1.p  84 QRENHILAERQRREEMNEKFSALRAMIPKA-----TKKDKASIVGDTINYVLELE 133
                           79****************************.....9***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1676143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.35583132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-1484137No hitNo description
Gene3DG3DSA:4.10.280.102.0E-1684143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.47E-6252317No hitNo description
Gene3DG3DSA:3.30.70.2601.8E-4253315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MWVGGCMGVV TGSMGTFYQQ HDDEIGADTM VVVAATAAAA AEGDYAAQQL LSERQSSKQE  60
LMAYRSLCSE IYATERSPHR SQFQRENHIL AERQRREEMN EKFSALRAMI PKATKKDKAS  120
IVGDTINYVL ELEKRLKHLQ GCKDIEGGGG GGDPSSGFFK STKRKVAPLT AVPYSSNIFE  180
DTSGQPPIHA QSDVGASPEK QPVCNDRLLQ QLHVEKSRPR DISVISTPSD QLTGESKSEE  240
KKGAEVDVQK LGNQAVIKLV CSRTPGQVLR VLHALDECKV DLLQSNVTTV GDISVHFVTV  300
QLEAGVSVTT EELISALLLA ACPN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384192.11e-89transcription factor FAMA-like isoform X2
TrEMBLA9SKT12e-88A9SKT1_PHYPA; Predicted protein
STRINGPP1S89_172V6.14e-89(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.17e-16bHLH family protein