PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0023s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | SBP | ||||||||
Protein Properties | Length: 793aa MW: 88280.8 Da PI: 5.5923 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 107 | 1.3e-33 | 139 | 216 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C adl+++k+yhrrh+vC ++++a++v ++++ +r+CqqC+rfh ls+fDeekrsCr++L++hn+rrr+k + Sphfalx0023s0010.1.p 139 RCQVPACGADLASLKSYHRRHRVCLHCANATSVKLHQRLHRYCQQCGRFHVLSDFDEEKRSCRQKLERHNNRRRQKVQ 216 6*************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-25 | 136 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 27.59 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-29 | 138 | 217 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.8E-25 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MMGHSVETMM GWEWDSLLLL INPAIADTSD GGGVVGDALL DSAACGFSVG QSWPEFEDFD 60 TGPGILVEEE EETQRQQFAK TKPQYRDSTE KAGNEERRDP RLDCPNFLAG RVPCACSDNE 120 DEEEEGGGSH SKRVKLSARC QVPACGADLA SLKSYHRRHR VCLHCANATS VKLHQRLHRY 180 CQQCGRFHVL SDFDEEKRSC RQKLERHNNR RRQKVQESGE DTTTITIDND NPSLEEGKDG 240 KSMVEEKATV DNEVQSDADR SCSLVAPTIP LLAEQLKTTD EAHPSLPNPN ASNTMMPDHM 300 HNHAPKSQVL TPIQPGHLWD PGPKEQSVEK GEVGVRKVGV DEDSLLALLL EEAPDEVNHL 360 RHMSDLPTVI STRERDRSST YTARYPSGQI SFKLYDWNPG DFPRNLRQQI LEWLSNMPVE 420 LEGYIRSGCT ILTLFIAMPQ SMWDKLYVDW AGAVRKLVQG PQSVAGFWDQ GYFKAKLGWK 480 TVHFVDGQLV NRSGGKKECM PCMPVLKSVQ PICFEAASEG QLTVSGENLL HPNTRLLVSA 540 GGKYLNAYVV QSCHENEEDE WKIIIPALDC SQVGPLFIEV ENEGGTSNSM TVLVGDRNLC 600 SELERLELEV SRGCEQDLVF DLGWMLRDSS CQHSGACSRL QDLFLYAKAC GWHSLAEYVL 660 QAAGRKGMLP EVTKVGDKTY PFRGDMDAPQ ALMVLPTMVL EWNSAHLLPP FKKDRKFGKK 720 DVHITVDSGR DTLVPLIPKQ RRGSCNQSWG TYRVMAAVAT VTAACAGVCL VLVHPDEVIQ 780 LSTSLHHRLW GQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 1e-29 | 138 | 219 | 4 | 85 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372070.1 | 0.0 | squamosa promoter-binding-like protein 9 isoform X1 | ||||
Refseq | XP_024372072.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2K1KWR8 | 0.0 | A0A2K1KWR8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S55_237V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.3 | 1e-49 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0023s0010.1.p |