PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0022s0120.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 1213aa    MW: 128917 Da    PI: 4.8854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0022s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038337359123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C++C + F +  +Lk H + H
  Sphfalx0022s0120.2.p 337 YMCQICEEEFETARDLKLHKKEH 359
                           89*******************99 PP
2zf-C2H211.50.0009311821200523
                            TTTEEESSHHHHHHHHHHT CS
               zf-C2H2    5 dCgksFsrksnLkrHirtH 23  
                             C++ F++ ++L +H++tH
  Sphfalx0022s0120.2.p 1182 TCDQGFTSLEHLSSHQNTH 1200
                            6*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-6154177IPR007087Zinc finger, C2H2
SMARTSM003550.1155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598337359IPR007087Zinc finger, C2H2
SMARTSM003550.0066337359IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.33E-7337359No hitNo description
PROSITE patternPS000280339359IPR007087Zinc finger, C2H2
SuperFamilySSF576673.33E-7414441No hitNo description
SMARTSM003550.018419441IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702419446IPR007087Zinc finger, C2H2
PfamPF139123.3E-6421443IPR007087Zinc finger, C2H2
PROSITE patternPS000280421441IPR007087Zinc finger, C2H2
SuperFamilySSF576673.94E-6702725No hitNo description
PROSITE profilePS501579.66703730IPR007087Zinc finger, C2H2
SMARTSM003550.46703725IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-7703727IPR007087Zinc finger, C2H2
PROSITE patternPS000280705725IPR007087Zinc finger, C2H2
SuperFamilySSF576673.94E-6810837No hitNo description
SMARTSM003550.98815837IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-11815839IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328815842IPR007087Zinc finger, C2H2
PROSITE patternPS000280817837IPR007087Zinc finger, C2H2
SMARTSM0035513011811200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1213 aa     Download sequence    Send to blast
MMEEEGAAPP QDHLVAMDVD GGIVVVESCD AKDHQGSSMH GSFQQEEEEG RSGPVTAAAA  60
DPETSTFPSS ATQETKKTLS TATACGRGGA GAGAGEDYEA SGSRDDGQLL EVFNNNKKQR  120
KRSSDCLAAS DSASLGGGGG GGGLDGEAAA ASHHHVCRQC KREFSSGRAL GGHMRAHGSL  180
AMEDGNARVT WNNSSETVVA AAAAAASDKE VQQQLTSSSS WRARGTSYLV NPASDLDSCR  240
DESSPSLASS RPLRLGNYSC SRSEEAGRVR KRGRISSSAA DAATELVGRC QEPEEDQDHE  300
EEEATSVLLG SSSSSEATGN SKMQQAEEFD VTEGTSYMCQ ICEEEFETAR DLKLHKKEHP  360
QYILRMNPKR SQRFLDQDSS DLLLAATAAA TGQSTHHHQP KKAALSSGMG TTEESKLPIS  420
CTECEKKFGS MKALFGHMRC HPEREWRGIQ PPPDRSTAAA GHAANHGSSR KKRRPPPPVV  480
PLPTADPESE SETETDSKPP AAAGGKLGSD LDSDTESIEA AYINGSSRQS SGPPGWRTKK  540
RTKRTKQTVR SLQAVVTGGG GGGTAAAPEE EEEEEPGPSS SSTPTETQVH KDIVFALMLL  600
RPKRVAQLSH PPSLEQQQCK QEGSRSMNMA EKFKAPNVDN YKSTDCHDTH KQHQHQQYHR  660
DPDDSKGKRH VEDAAEHAAL ISDGQDFDEM ETGEQGGGMR MMYQCATCKR IFKSHQALGG  720
HRASHKKVKG CFARTSVNDE EGFGRQQDQS TEDNNKEDIP DEDFLKAEEQ LLLPHEPQEP  780
SHHSEEDAEL PCDYLTVARG DNEEMLNAVR KSKGHECSIC HRIFNSGQAL GGHKRCHWGG  840
GTGTAGPNDA TTTVHNLNNN NAVVMLNGDQ PGLQESHPIQ GLPVPGGQQN KGMQEGIIDL  900
NMPAPECVEE IVEEQIASAS ASGMAPLIDH HHPSYLPFPT FTTDSPAFII QQPCSDPVEK  960
CTQQQHIKFL GESMDTKVDK SLEPIASNGA TDAGGDFRTG DAADQGMDPG MKGTDAGGDF  1020
RTGDAADQGV DPGMKGTDAG GDFRTGDAAD QGMDPGMKGT AAVGDFRIGD AADQGMGPGM  1080
KGTVAVGDLR TGDAADQAMD QGMKGTDAVG DFRTGDAADH VMDQGMKGTE LQHTKSCWGD  1140
SLDTKVDESI EPITSVGATD GVGFRTGDAN AMDRGMNNFS NTCDQGFTSL EHLSSHQNTH  1200
AAIMGPAPSL TA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-18C2H2-like zinc finger protein