PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0022s0100.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 476aa    MW: 51387.9 Da    PI: 4.7946
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0022s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-18121174356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0022s0100.1.p 121 KKRRLTFDQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 174
                           55678999*********************************************9 PP
2HD-ZIP_I/II121.83.4e-39120211192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye L + y++lk+e e++++e++eL++
  Sphfalx0022s0100.1.p 120 EKKRRLTFDQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEILTQDYNRLKSELESVRDEKQELQA 208
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           ++k
  Sphfalx0022s0100.1.p 209 KVK 211
                           987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-20102177IPR009057Homeodomain-like
SuperFamilySSF466893.3E-19113178IPR009057Homeodomain-like
PROSITE profilePS5007117.443116176IPR001356Homeobox domain
SMARTSM003897.0E-15119180IPR001356Homeobox domain
CDDcd000861.05E-15121177No hitNo description
PfamPF000461.9E-15121174IPR001356Homeobox domain
PRINTSPR000311.1E-5147156IPR000047Helix-turn-helix motif
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5156172IPR000047Helix-turn-helix motif
PfamPF021834.7E-13176216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MMQQRQANNN LVRGFATGPS DMMLMSNRSE NSSTDTLAAM LASCTPAGAL QASRSSGSLE  60
DAVMGCGSGG GGGQKRPSSF YPPPPPTTST TFDASLLLDA AGMDAADDGG DEYCGLHNAE  120
KKRRLTFDQV RSLERNFELE NKLEPERKMQ LAKELGLQPR QVAVWFQNRR ARWKTKQLER  180
DYEILTQDYN RLKSELESVR DEKQELQAKV KWLTEKSTTQ PEEESAAGCQ AAPIGSYVQQ  240
QQSSSKLVET TATTLNHQPG ATSNESPSEQ LTLPEKPSGA VVEAHVFSRS SSCRDMVDDQ  300
PTRLTAFINP VSSSAEVMPS SSAATRTRKR KDGSPSSAYS TSSEILDADS PRTIDSGLNS  360
HTIMSSTVTS STVAASSACP GQMYVDTAAA TTTTIVNVPS NSCLNVDLVM GQDLVCSRTF  420
SDPQTYNQRS TTSAVKLEGA INGAAMVFQP ADQDSCNYLL PQVDEHGALP WWDWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.15e-38homeobox protein 16