PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0022s0081.8.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 749aa MW: 80586.3 Da PI: 5.9586

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0022s0081.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.6e-09	500	546	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h +Er RR + ++++++L +++P+ kK + ++L+ +++YI+ L Sphfalx0022s0081.8.p 500 QKHMLAERDRRFKFKEKIHTLCSIVPTT-----KKKDNLSVLTNTIDYIRRL 546 57999********************9.....78899**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.874	497	546	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	500	546	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.80E-8	500	551	No hit	No description
SuperFamily	SSF47459	4.32E-12	500	558	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-12	501	555	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-7	503	552	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MATSGAAAAS ELAGHGDNVE FNWEERFQAL VQNWSWIDYI VVWKLNPHTP ALVWHRGYFN 60 DRSSSFHPEY SRRIAPIFSS IYRSCVFRSS NSGYAARAVY EQAPLWWTSN QPRLPTDERK 120 DQFLQELGIK TIVCLPGLGT DGNMYCLELA STQLESSGML QALLAFASGS REQQLLAAGL 180 DEEELAVAQQ QQENIQLESV STPSSDAEAA GGVPTDMMLN LWASMSDIDD AQMQMSSFMQ 240 RSTLDSLVMA HDIMQIGQPP AAAAATMFGT TTQYPAMPVS ATPAFHNVLP YHQLPGQHQS 300 ASTPYQRMET PELSAASTTA LEAAPSSSMN RLQAAGLPLA PADPSSHVRQ GMLAQLAGDT 360 RMPPAGSARA VDQQLGNPSE STVRSRAAAV SLHSPFKSFE PISRHPKLRR LDDSRDTGNI 420 AGPSKPRQPM IELWIKDLCP RIQESDRMKR RLQLGATVAG SSMNPAGAAG GSFMQGDTHV 480 SADQQYYSPG WIEEQAQIAQ KHMLAERDRR FKFKEKIHTL CSIVPTTKKK DNLSVLTNTI 540 DYIRRLKEQI AGLEMAGSTS TAAASTHDPA VLQAPAVTSS AGPSSSTAAA ELAQAQQQLR 600 SEAAAAATTH PSSSSINNTT TVAVSWRQFE LAGTEAAGAH GAMRAGTNTG ISSNAAGQLV 660 IEVETPYNNP QSLIQVLSVV QDLGLDLDSL SSGNLNNGRM QISVRVLAPA GSSSSQQLIQ 720 LSSVVKEKLE TMLALDSRNT PSTTSEMQ*

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MATSGAAAAS ELAGHGDNVE FNWEERFQAL VQNWSWIDYI VVWKLNPHTP ALVWHRGYFN  60
DRSSSFHPEY SRRIAPIFSS IYRSCVFRSS NSGYAARAVY EQAPLWWTSN QPRLPTDERK  120
DQFLQELGIK TIVCLPGLGT DGNMYCLELA STQLESSGML QALLAFASGS REQQLLAAGL  180
DEEELAVAQQ QQENIQLESV STPSSDAEAA GGVPTDMMLN LWASMSDIDD AQMQMSSFMQ  240
RSTLDSLVMA HDIMQIGQPP AAAAATMFGT TTQYPAMPVS ATPAFHNVLP YHQLPGQHQS  300
ASTPYQRMET PELSAASTTA LEAAPSSSMN RLQAAGLPLA PADPSSHVRQ GMLAQLAGDT  360
RMPPAGSARA VDQQLGNPSE STVRSRAAAV SLHSPFKSFE PISRHPKLRR LDDSRDTGNI  420
AGPSKPRQPM IELWIKDLCP RIQESDRMKR RLQLGATVAG SSMNPAGAAG GSFMQGDTHV  480
SADQQYYSPG WIEEQAQIAQ KHMLAERDRR FKFKEKIHTL CSIVPTTKKK DNLSVLTNTI  540
DYIRRLKEQI AGLEMAGSTS TAAASTHDPA VLQAPAVTSS AGPSSSTAAA ELAQAQQQLR  600
SEAAAAATTH PSSSSINNTT TVAVSWRQFE LAGTEAAGAH GAMRAGTNTG ISSNAAGQLV  660
IEVETPYNNP QSLIQVLSVV QDLGLDLDSL SSGNLNNGRM QISVRVLAPA GSSSSQQLIQ  720
LSSVVKEKLE TMLALDSRNT PSTTSEMQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	2e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0022s0081.8.p