PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0022s0081.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 751aa MW: 80842.6 Da PI: 6.0703 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.7e-09 | 502 | 548 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h +Er RR + ++++++L +++P+ kK + ++L+ +++YI+ L Sphfalx0022s0081.5.p 502 QKHMLAERDRRFKFKEKIHTLCSIVPTT-----KKKDNLSVLTNTIDYIRRL 548 57999**********************9.....78899************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.874 | 499 | 548 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.82E-8 | 502 | 553 | No hit | No description |
Pfam | PF00010 | 1.7E-6 | 502 | 548 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-12 | 502 | 560 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 503 | 557 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-7 | 505 | 554 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 751 aa Download sequence Send to blast |
MATSGAAAAS ELAGHGDNVE FNWEERFQAL VQNWSWIDYI VVWKLNPHTP ALVWHRGYFN 60 DRSSSFHPEY SRRIAPIFSS IYRSCVFRSS NSGYAARAVY EQAPLWWTSN QPRLPTDERK 120 DQFLQELGIK TIVCLPGLGT DGNMYCLELA STQLKQESSG MLQALLAFAS GSREQQLLAA 180 GLDEEELAVA QQQQENIQLE SVSTPSSDAE AAGGVPTDMM LNLWASMSDI DDAQMQMSSF 240 MQRSTLDSLV MAHDIMQIGQ PPAAAAATMF GTTTQYPAMP VSATPAFHNV LPYHQLPGQH 300 QSASTPYQRM ETPELSAAST TALEAAPSSS MNRLQAAGLP LAPADPSSHV RQGMLAQLAG 360 DTRMPPAGSA RAVDQQLGNP SESTVRSRAA AVSLHSPFKS FEPISRHPKL RRLDDSRDTG 420 NIAGPSKPRQ PMIELWIKDL CPRIQESDRM KRRLQLGATV AGSSMNPAGA AGGSFMQGDT 480 HVSADQQYYS PGWIEEQAQI AQKHMLAERD RRFKFKEKIH TLCSIVPTTK KKDNLSVLTN 540 TIDYIRRLKE QIAGLEMAGS TSTAAASTHD PAVLQAPAVT SSAGPSSSTA AAELAQAQQQ 600 LRSEAAAAAT THPSSSSINN TTTVAVSWRQ FELAGTEAAG AHGAMRAGTN TGISSNAAGQ 660 LVIEVETPYN NPQSLIQVLS VVQDLGLDLD SLSSGNLNNG RMQISVRVLA PAGSSSSQQL 720 IQLSSVVKEK LETMLALDSR NTPSTTSEMQ * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28800.1 | 2e-08 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0022s0081.5.p |