PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0022s0017.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MIKC_MADS
Protein Properties Length: 510aa    MW: 55629 Da    PI: 7.0276
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0022s0017.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.5e-29959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien++nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++gkl  y++
  Sphfalx0022s0017.3.p  9 KKIENTTNRQVTYSKRRNGLMKKAYELSVLCDIDVALIMFSPSGKLTQYCN 59
                          68***********************************************85 PP
2K-box16.92.7e-071472311092
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGed.L..esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                           ++ +   lq++++kL  e + Lq+  R ll ++ L  +  sl++L  +e++Le++l+++R++Kn +      +lq    ++q++++
  Sphfalx0022s0017.3.p 147 KSYELGLLQEQVKKLTHEKDVLQHRARFLLADEqLiqTVTSLQQLATMETELEQALERVRQRKNSVTN-AAYDLQATSTAIQRQHE 231
                           455566789**************999*9998654432335899*********************9854.45556666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.506161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-32286IPR002100Transcription factor, MADS-box
CDDcd002655.86E-38273No hitNo description
PRINTSPR004042.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.629151244IPR002487Transcription factor, K-box
PfamPF014866.5E-6153231IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MGRVKLEIKK IENTTNRQVT YSKRRNGLMK KAYELSVLCD IDVALIMFSP SGKLTQYCNC  60
SIEDVIARFA NLPLHERNKS FEDMLTRFAS FHMHHDRNKY NSRNSQNLEL YLHKALKKLN  120
AGGGEKVDDH MGLTQHDELA ATQESSKSYE LGLLQEQVKK LTHEKDVLQH RARFLLADEQ  180
LIQTVTSLQQ LATMETELEQ ALERVRQRKN SVTNAAYDLQ ATSTAIQRQH EFMGNMQLMA  240
MQQRGGGGGS GAMAAAGGQA AAAAASSSLM QWNIIPERDD QQTMSAAATP QLDFMELHQS  300
SNTSLVLPAR QISRDDVGSN VTISGDGDAS RTSAFFQVPQ STQPEHELQY RMGLVARSGM  360
ISSTTTSVAA AHAAAARGFR ELANIPDSRS SAAAALVGQY EESPNKKTKL EARGAAGNVT  420
SSTMQQAFAA ASGLNATDCP DRSPAAADDQ TFVNPESAEQ QVRHASDSSA GTAAAAAPWL  480
QYSAHLQSHH NHQQAYSNSQ YPTAYFSQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-18185185MEF2 CHIMERA
6byy_B6e-18185185MEF2 CHIMERA
6byy_C6e-18185185MEF2 CHIMERA
6byy_D6e-18185185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344560.0GQ334456.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD3IZT80.0D3IZT8_9BRYO; MIKC* MADS-box transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-33AGAMOUS-like 66