PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0022s0017.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 507aa MW: 55252.5 Da PI: 7.1382 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++gkl y++ Sphfalx0022s0017.2.p 9 KKIENTTNRQVTYSKRRNGLMKKAYELSVLCDIDVALIMFSPSGKLTQYCN 59 68***********************************************85 PP | |||||||
2 | K-box | 16.2 | 4.5e-07 | 147 | 220 | 10 | 81 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGed.L..esLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 ++ + lq++++kL e + Lq+ R ll ++ L + sl++L +e++Le++l+++R++Kn + + +lq Sphfalx0022s0017.2.p 147 KSYELGLLQEQVKKLTHEKDVLQHRARFLLADEqLiqTVTSLQQLATMETELEQALERVRQRKNSVTNA-AYDLQ 220 455556789**************999*9998654432335899*********************98544.34445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.506 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.16E-38 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 6.8E-32 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.302 | 151 | 237 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.7E-5 | 153 | 230 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MGRVKLEIKK IENTTNRQVT YSKRRNGLMK KAYELSVLCD IDVALIMFSP SGKLTQYCNC 60 SIEDVIARFA NLPLHERNKS FEDMLTRFAS FHMHHDRNKY NSRNSQNLEL YLHKALKKLN 120 AGGGEKVDDH MGLTQHDELA ATQESSKSYE LGLLQEQVKK LTHEKDVLQH RARFLLADEQ 180 LIQTVTSLQQ LATMETELEQ ALERVRQRKN SVTNAAYDLQ ATSTAIQRQL MAMQQRGGGG 240 GSGAMAAAGG QAAAAAASSS LMQWNIIPER DDQQTMSAAA TPQLDFMELH QSSNTSLVLP 300 ARQISRDDVG SNVTISGDGD ASRTSAFFQV PQSTQPEHEL QYRMGLVARS GMISSTTTSV 360 AAAHAAAARG FRELANIPDS RSSAAAALVG QYEESPNKKT KLEARGAAGN VTSSTMQQAF 420 AAASGLNATD CPDRSPAAAD DQTFVNPESA EQQVRHASDS SAGTAAAAAP WLQYSAHLQS 480 HHNHQQAYSN SQYPTAYFSQ NPDAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_B | 4e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_C | 4e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_D | 4e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ334456 | 0.0 | GQ334456.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D3IZT8 | 0.0 | D3IZT8_9BRYO; MIKC* MADS-box transcription factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-33 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0022s0017.2.p |