PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0021s0090.4.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 602aa    MW: 69404.1 Da    PI: 7.1783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0021s0090.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.42e-09199251153
                   AP2   1 sgykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                           ++ykGVr++++r r   W Ae++ p e   + ++++    t+e Aa a++ a+ ++
  Sphfalx0021s0090.4.p 199 TKYKGVRFRPSRSRtkpWTAEVKPPME---KNKVWIDDCNTPEAAAHAYDVAAFYY 251
                           69*******************666644...489********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-6199252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-13200262IPR001471AP2/ERF domain
SMARTSM003805.5E-5200267IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-9200262IPR016177DNA-binding domain
PROSITE profilePS5103215.343200261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MVFDAERLRP VVEYVTRAAN DFSFAKTMFI KNCSLLFLDI PRPPATGIHS VRTWRERMAL  60
RSDCVMSFET EELVHCRGRD PVSAYPLIRL TDDFDILASS SLERCSTSEY WRKTVHEPLE  120
FPEFLLDSLA RLVTLIRLFD HNLVSIQDSP RFQLVMQVDI YDLTSSERVK RGVKRAWLIG  180
ETLALETGSG HKQPNIHRTK YKGVRFRPSR SRTKPWTAEV KPPMEKNKVW IDDCNTPEAA  240
AHAYDVAAFY YGKGNKALNF EHTPRFLPKT LEYSCEKEKK HAIQEQARHL RRNPLFYLIH  300
HLPYDLLFCF VIWELYPLKN QPQIRIALMV VQLMRLMRKD SSVIAFLKWV SSNKEIAHLH  360
APTNIPQLLE SIDCLIKKIP QQKDGHSYSY RSVPGFNFFF GWFEARAPTK DIPLTFQFIE  420
WVRINLVTPQ ITSMEAKHLP ASPPECNVLS TTSVEIDLRA PQLSSMAMEA EDPLVNIPPQ  480
CNTLSVHYPH EQIRETFEQD LVILQKFSLE RQHSTYQDAT PEEQVVQSPI VEQPATIVLS  540
TPVAAIVEKS LLPSPPLDVE VPNEGFQTGD LYEHVQVSVL FQLEPKLKVP LLWIWMLEKT  600
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-