PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0021s0040.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family BBR-BPC
Protein Properties Length: 320aa    MW: 34856.4 Da    PI: 9.2155
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0021s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind256.12.2e-78931911301
             GAGA_bind  11 kgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salp 96 
                           + ++++ a+  +++ lql+++iaerda++ e+ +a+sek aa aerd a+lqrd+ala+r+ al++rd ++ al ++e++++    + p
  Sphfalx0021s0040.1.p   9 WHHHRK-AASDHHVVLQLITVIAERDAALLEKSTAISEKMAAWAERDAALLQRDAALADRDSALLKRDAAISALAKAEKESSscaRKRP 96 
                           333333.35567999**********************************************************9999887776775666 PP

             GAGA_bind  97 vgv.qvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk....akkkkk...ksek 173
                           ++  ++ +g+k ++ +   ++     ++++++v + + + +++     +++  + ++++ + qr+++p+++     ++k+ +   k+ +
  Sphfalx0021s0040.1.p  97 SSAgGINPGSKLLQRVGFAEHyslvGEFQPNSVMTFDAHSTQVA---GEHPAFQGTRTQTELQRKQSPQVSPgvsaQNKALHlavKKVE 182
                           65515678999999999988866666666666666555554443...333333333333333333333333300003322220002222 PP

             GAGA_bind 174 skkkvkkesad.erskaekksidl..vlngvslDestlPv......PvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
                           s+ +  + + +  ++k + ++ ++  +    +   +t+Pv      P CsCtG+ +qCY+WG+GGWqSaCCtt +S +PLP+++k+rg+
  Sphfalx0021s0040.1.p 183 SWPSPMQRQLQgYQVKGDEEEGQIhgSESASTASYTTIPVsaptqiPYCSCTGMNQQCYRWGCGGWQSACCTTLLSLHPLPMNPKKRGS 271
                           222222222223447777777777422334456678999555555599***************************************** PP

             GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           R+agrKmS gaf klLekL  eG d+s  vDLkdhWAkHGtn++vt+r
  Sphfalx0021s0040.1.p 272 RVAGRKMSAGAFDKLLEKLKLEGVDISYSVDLKDHWAKHGTNRYVTLR 319
                           **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.7E-641319IPR010409GAGA-binding transcriptional activator
PfamPF062171.7E-688319IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDGIERGSWH HHRKAASDHH VVLQLITVIA ERDAALLEKS TAISEKMAAW AERDAALLQR  60
DAALADRDSA LLKRDAAISA LAKAEKESSS CARKRPSSAG GINPGSKLLQ RVGFAEHYSL  120
VGEFQPNSVM TFDAHSTQVA GEHPAFQGTR TQTELQRKQS PQVSPGVSAQ NKALHLAVKK  180
VESWPSPMQR QLQGYQVKGD EEEGQIHGSE SASTASYTTI PVSAPTQIPY CSCTGMNQQC  240
YRWGCGGWQS ACCTTLLSLH PLPMNPKKRG SRVAGRKMSA GAFDKLLEKL KLEGVDISYS  300
VDLKDHWAKH GTNRYVTLR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391178.12e-95serine/threonine-protein kinase 24-like
TrEMBLH1ZN632e-99H1ZN63_PHYPA; GAGA-binding transcriptional activator
STRINGPP1S56_2V6.16e-95(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.14e-47basic pentacysteine 3