PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0021s0035.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 659aa MW: 70026.6 Da PI: 7.0362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0021s0035.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.1e-07	545	586	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri +++ L+ l+P+ K++ +++LekA++Y++ L Sphfalx0021s0035.1.p 545 AARVRRERISERLKYLQALIPNG-----DKVDMVTMLEKAINYVQCL 586 6799****************5.....5*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.28E-8	534	591	No hit	No description
PROSITE profile	PS50888	13.579	537	586	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-12	541	600	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	542	596	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	543	592	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-5	545	586	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MEDVGLWQAY EAQALMYNAA PDNHQTASVA DSPACTPQQS SFLPCWNESW LHAPRGPHEE 60 IHDVSTLVST PSLLMDTVSF EQRHHQQFIQ AVSSSSSSPE LLQNIVVPCT RSDGLWQLPH 120 HSGGGGSSLL ASELYSCSSG GDDHSELHKS TTQIGLFSNM SMARTSNSDF QSGYNNDKLL 180 IQPATSGAAS TAAAAAAAGG GAMMMSTRTH QFSGGTVAQM HATTAGGSVR RDSCLDELLQ 240 NPHKLYQLPV VVPEKIQMAA IMDPRFSPRG NGDAAATMNA QQENLPRQTG VAAAGGMKSM 300 ASFNPGPFVS SSRSAAAPAP AVGERQEHGI LATHKTWFEN KPGNNTTAPN NMPGFDQLGG 360 SSAQRIVASQ QQQQQQQQMV VRPQSLGNEW PSRRMMSSIP AVPLPAPWLK PVVDERISNI 420 VIMQPEAAAG TITALKCALP RCPSPAAAAS SGSTVAFINS RKRSILQGDS FEGSFQNIGK 480 KPVAGGGVPW SDQDGCSRLE FLSTAAHKQV SQSTAGGSRA LGPALNTNLK PRARQGSAND 540 PQSIAARVRR ERISERLKYL QALIPNGDKV DMVTMLEKAI NYVQCLELQI RMLKDDSVWP 600 KALGALPTTF HELLEIAGPE FAGSGQSKAD VAESKPKISA ESIGEDPANP PPLTHTIH*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MEDVGLWQAY EAQALMYNAA PDNHQTASVA DSPACTPQQS SFLPCWNESW LHAPRGPHEE  60
IHDVSTLVST PSLLMDTVSF EQRHHQQFIQ AVSSSSSSPE LLQNIVVPCT RSDGLWQLPH  120
HSGGGGSSLL ASELYSCSSG GDDHSELHKS TTQIGLFSNM SMARTSNSDF QSGYNNDKLL  180
IQPATSGAAS TAAAAAAAGG GAMMMSTRTH QFSGGTVAQM HATTAGGSVR RDSCLDELLQ  240
NPHKLYQLPV VVPEKIQMAA IMDPRFSPRG NGDAAATMNA QQENLPRQTG VAAAGGMKSM  300
ASFNPGPFVS SSRSAAAPAP AVGERQEHGI LATHKTWFEN KPGNNTTAPN NMPGFDQLGG  360
SSAQRIVASQ QQQQQQQQMV VRPQSLGNEW PSRRMMSSIP AVPLPAPWLK PVVDERISNI  420
VIMQPEAAAG TITALKCALP RCPSPAAAAS SGSTVAFINS RKRSILQGDS FEGSFQNIGK  480
KPVAGGGVPW SDQDGCSRLE FLSTAAHKQV SQSTAGGSRA LGPALNTNLK PRARQGSAND  540
PQSIAARVRR ERISERLKYL QALIPNGDKV DMVTMLEKAI NYVQCLELQI RMLKDDSVWP  600
KALGALPTTF HELLEIAGPE FAGSGQSKAD VAESKPKISA ESIGEDPANP PPLTHTIH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-24	ROOT HAIR DEFECTIVE 6-LIKE 2

Link Out ? help Back to Top
Phytozome	Sphfalx0021s0035.1.p