PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0020s0242.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 428aa MW: 47480.2 Da PI: 9.1983 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.6 | 2.1e-15 | 31 | 112 | 2 | 82 |
trihelix 2 WtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 Wt +e +L+ea+++ +e l +k ++ +W++v++++++rg++rs +qC+ kwen ++kk+++ e +r ++++ +yf Sphfalx0020s0242.1.p 31 WTLKESIVLLEAKKREKEILTGSKrnsvSADEKWRAVAEYCWSRGVQRSKEQCRFKWENTMPDFKKVRDYEDDRGDNDK---SYF 112 ************9977666654333445999*****************************************9966665...344 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.503 | 23 | 91 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.8E-10 | 31 | 115 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence Send to blast |
MMGEGDKGER FEQVVAGATK EEDRVYRPGV WTLKESIVLL EAKKREKEIL TGSKRNSVSA 60 DEKWRAVAEY CWSRGVQRSK EQCRFKWENT MPDFKKVRDY EDDRGDNDKS YFEMESWQRK 120 QLSLPPNLNR DLYGIMDKLL LRRPSKQAGS GSTKKESRGK EVVQQDETAV LEAAVSTLPS 180 GEEFPSEIPR RDSVVPRDIT SLVGTEVSQG EIVGERSASG AQTATRQKDM PTPDVKGSAR 240 KRRKKTSETR ELESGFGAPV EHRTSVEIGS ASTPLPGFRE LDTTATDTAR ADVRSGSVLI 300 SEVPSQGPGV QLVRLEASRE LPFKQMGQQH QGRSEAGDTS SPVKGQKKVG PSSTEPAAEI 360 NTTTAEAQKS ADYLMRTEEK KDARHREKIA LEREKLAANK EAMNTIAMAL NNVANAFLKM 420 ADLLQRS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35640.1 | 3e-21 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0020s0242.1.p |