PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0020s0167.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 576aa    MW: 61328.6 Da    PI: 6.0569
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0020s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.7e-06442537
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                           C+ +ee +++ +C+ ++  lC +C  + H+       H
  Sphfalx0020s0167.1.p  4 PCDFCEEGRATVYCRADSARLCLSCDRHVHSAnalslrH 42
                          6******99*******************99545555555 PP
2CCT639.2e-22518561144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+ a+lRYkeK+k RkF+KkirYesRKa+A+ R+RvKGrFvk+ 
  Sphfalx0020s0167.1.p 518 RNSAMLRYKEKKKIRKFDKKIRYESRKARADIRKRVKGRFVKAG 561
                           999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.2E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.428147IPR000315B-box-type zinc finger
CDDcd000211.06E-6447No hitNo description
CDDcd000210.00384788No hitNo description
PfamPF062033.8E-16518560IPR010402CCT domain
PROSITE profilePS5101715.18518560IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDAPCDFCEE GRATVYCRAD SARLCLSCDR HVHSANALSL RHVRTLLCDG CNLRPAAVRC  60
PVENLALCES CDWDSHGNSP IKSQHRRHAF DCFAGCPSAA ELGSLWGCDL VPSSVESRGV  120
STATRTAAPR NLQGFVNSNG SSYGAPGKVA TFASMSAAAA AGGPPLLAKS PVPTTGPVMM  180
GKEGGGGQGS KQQSREAVVQ QLHKLRVLDP QVQMQEVPMS LSLHLSKKPP SSLQSSPSEP  240
LTRASCVSQI QEQEQQPKTC TNQQPHLNHH QQQQQQAANL QNSRSLDSQI LVASETLELK  300
TEVCSDGLMQ GGDALWHSSS CQLWGQNMQD LGICGGEGDP CEGFSMADID LSFDNYEDIF  360
SSTQGLSSWS SNDIEAAAGC TPVGQDTIGE NQCEHMQSIP ELQLLEVNNG AMSGVSGCPQ  420
TQGYKGELAG QGPGPPPSPE MSEVGMMMGA AGLSSSNMES LQLVSQPTGS SLSLPLSGLS  480
GDSSDYLECT AASSMFLNAD PPSWAPTSPD SGALTQARNS AMLRYKEKKK IRKFDKKIRY  540
ESRKARADIR KRVKGRFVKA GQAYDYDPVG TTRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-38B-box type zinc finger protein with CCT domain