PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0020s0119.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 462aa    MW: 49591.7 Da    PI: 4.7283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0020s0119.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-08319359954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sphfalx0020s0119.2.p 319 ARHRRERISDRIRMLQRLVPGG-----TKMDTASMLDEAIHYVKFL 359
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13311372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-11312364No hitNo description
SuperFamilySSF474596.41E-14314370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5320359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MFGLSGDHAS QVMEKDEEEE EEEEEQLQQQ LLLLGGARKS HVGLLQAFAT GEQLSPGRVG  60
GSSVESLLQG SSTSSEMTAE GVDASGLICN SSMAMDRRCL EQLTTVGAST LSTDMLRENL  120
EIMAQSELEI MSPGASEPTV SDSSGSRTSG QNFGRVFFSH LQLAGGPDTV PDQCTLEPTV  180
FRAPLHVSGE TWRGGESSDG IVCSEGDVIY DATTTTPQMQ KLQYPVSQGI SGTSLTSVPL  240
LFPFPGTQVI SEAQAKAMMI PAADPAMRPI LTFGGGAPAA VIPPSSSRTL LGPEMELLSA  300
SRPKRRNVRI SKDPQSVAAR HRRERISDRI RMLQRLVPGG TKMDTASMLD EAIHYVKFLK  360
LQLQVLEQLG NSFDSNLTME RMPPAAYQLL VFSPQSGVAL SKPFDLNCSA YNQVAHDECP  420
SADVLHSSST TGSDHHITGW SSRTSLSSMC LPDHAQEQFC H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-25bHLH family protein