PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0020s0119.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 462aa MW: 49591.7 Da PI: 4.7283 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.9 | 3.6e-08 | 319 | 359 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Sphfalx0020s0119.1.p 319 ARHRRERISDRIRMLQRLVPGG-----TKMDTASMLDEAIHYVKFL 359 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-13 | 311 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-11 | 312 | 364 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-14 | 314 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-13 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-5 | 320 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MFGLSGDHAS QVMEKDEEEE EEEEEQLQQQ LLLLGGARKS HVGLLQAFAT GEQLSPGRVG 60 GSSVESLLQG SSTSSEMTAE GVDASGLICN SSMAMDRRCL EQLTTVGAST LSTDMLRENL 120 EIMAQSELEI MSPGASEPTV SDSSGSRTSG QNFGRVFFSH LQLAGGPDTV PDQCTLEPTV 180 FRAPLHVSGE TWRGGESSDG IVCSEGDVIY DATTTTPQMQ KLQYPVSQGI SGTSLTSVPL 240 LFPFPGTQVI SEAQAKAMMI PAADPAMRPI LTFGGGAPAA VIPPSSSRTL LGPEMELLSA 300 SRPKRRNVRI SKDPQSVAAR HRRERISDRI RMLQRLVPGG TKMDTASMLD EAIHYVKFLK 360 LQLQVLEQLG NSFDSNLTME RMPPAAYQLL VFSPQSGVAL SKPFDLNCSA YNQVAHDECP 420 SADVLHSSST TGSDHHITGW SSRTSLSSMC LPDHAQEQFC H* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 7e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0020s0119.1.p |