PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0020s0089.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 861aa    MW: 91079.8 Da    PI: 6.36
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0020s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09663710455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  Sphfalx0020s0089.1.p 663 SHSLAERVRREKISERMKYLQDLVPGC-----TKvTGKAVMLDEIINYVQSLQ 710
                           8*************************9.....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.33E-10657714No hitNo description
SuperFamilySSF474591.26E-16657727IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.466659709IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16659723IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6663710IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-10665715IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MMAYMGAAVA SELPSSSAYT TLQQQLQRSI SIPASTYSSS AMSILQLTES PAAAAAANSS  60
LASFSDKFLL DSSCQDSPYT PHGSHATVTS ACSSYQSDGS AALSGWQALD NMQQQQLANI  120
AAQTSPPPAA VSLQLAVAGS SSCSSSEILG STMMSSDWQQ LLDSSCNRFR ISSGIEGFAA  180
TTAGGHSNRL GGGNSAVRTA GGRRGGGGTT AGAGHSSCID SKLLNLSTAP RRPWSSLEKA  240
SCGISVEPTK GALALQGVGL ATSHCLEQFS SDPAFAERAA KFSSFSNNVG KYSSQIPQPL  300
PFVTSASDHS SGKSRHAPRI GSCSAPSRAA APQLADSESC KISSRSSCPA AGAAASGTGK  360
IINLQTACTS SSLSQKLETA NDPMQQDTQA ETDQPRDTQD PDRQLAPLLV AATDLHQDSA  420
PVQKPELIIP PLQQQQQLEE LETTGIVEAA TDSDMIDVKE LAAAHAGPTQ EADFSSTSEQ  480
ATCTTRAESS DDTARNKRKK QLHSETVKDQ SHTTAAYFTE SKLQQQVDDS ASDQDSRAKR  540
LKEGRHAAAA AAAAALEIHR EDTMTMTTTT TTTTTKSATF KDILASERSS SENSGDESLS  600
PGSTRVAGNK NKKNKQQHGT LHPSTMKNKV KALQQQPPCS EPTTSCKQDY VHVRARRGQA  660
TDSHSLAERV RREKISERMK YLQDLVPGCT KVTGKAVMLD EIINYVQSLQ QQVEFLSMKL  720
ASVNPPLDYS LDTILNRECP NLQMLQSGAS SLLGLEPSSN YWLHQTPLIQ QPITTDPEHF  780
SSLGTIDGHH LRRTFSAPTR VPSASSVDAF GDDTTQISTG WDGELQSILQ MGFAQTGRAT  840
SLLDGFNNCQ LAAGHMKVEL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200207GGRRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387315.15e-69uncharacterized protein LOC112287918
TrEMBLA0A2K1JZ821e-67A0A2K1JZ82_PHYPA; Uncharacterized protein
STRINGPP1S145_69V6.12e-68(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-52bHLH family protein