PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0020s0076.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 643aa MW: 70724.2 Da PI: 7.1146 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.2 | 3.7e-12 | 12 | 91 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwen.lnkrykkikegekkrts 73 rWt+ e l+L +a r +ee+ r+ + + +We+v++++r++g+ r++ qC +w++ l +y++++e+++k+++ Sphfalx0020s0076.1.p 12 RWTRYENLVLANALRAREEEARDVAtkssvgMASDKWERVANFCRRQGVMRTAAQCHGRWRKgLLPDYRRVREWQRKNHE 91 8*****************9999753334566899**************************87699***********9754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-4 | 8 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.655 | 12 | 75 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MEAEDELRVA QRWTRYENLV LANALRAREE EARDVATKSS VGMASDKWER VANFCRRQGV 60 MRTAAQCHGR WRKGLLPDYR RVREWQRKNH ENGRGPTAES SSSSSYWKMK EKQRRECKLP 120 ISMDEELYKV LFTFMEPELK ITTGSPESEV DSGRHAAIIA LDPKDSREAQ AQCPPLDSTQ 180 LPAAAPDTGT CSAEDMGQNS TLQKRKRLSS GLVAPEAIVT VDTSRIPMGI LVTVPHSLNS 240 TQGYNDGAAA VGPAMSSCLE IAQMAMSSHR ETDKSSCLKS DGDKSRRSAL EAHLVEQKEA 300 LRMQEKLVSD QVIQLVEKSN ARLQGQLQAL FAQMHMQVQV VSAQMQAQVH EATQSVQAEL 360 QTLLQKHSDQ VHSYLGSCYT PAQSQFAGHC PDVDMHAPKR GSIGATSSQP LHDDLAQSGP 420 SSCTPRQANS ERDRHVRQRQ GDHHAEAFPT HLKSQLPAAE QVMDRILAPP QLVPSSAPIW 480 TQAQFVISEL DRVLGHQRPA NLPIISPPSK CTYSLSEPHR SLRQQPLQKQ KTSGPHADLP 540 SGGVKALEAQ VSSDPDRVTS DKSRRGPPAI SIHGPVLALP RVVTTPTSRT LHDQDTCKAN 600 KDTTDSETLC EEAMPDSEEE LGVTSGKTTS HQTSGEPEDR RS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 4e-13 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0020s0076.1.p |