PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0020s0065.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 382aa MW: 40900.1 Da PI: 5.9014

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0020s0065.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.9	8.3e-37	60	119	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + k ++cprC+s+ntkfCy+nnys++qPryfC++C+ryWt GG+lrnvPvGgg+rk+ ++ Sphfalx0020s0065.1.p 60 PAKVIPCPRCESMNTKFCYFNNYSVKQPRYFCRQCQRYWTVGGTLRNVPVGGGSRKKSRN 119 568899**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-23	58	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-32	62	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.857	64	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MQLLVNPDSV DAGGGGPNEA AEQQLGGVAA GSSPASSPAG EGVSAGGSPG SGGTNLREKP 60 AKVIPCPRCE SMNTKFCYFN NYSVKQPRYF CRQCQRYWTV GGTLRNVPVG GGSRKKSRNQ 120 RSEPYLRSAG ATQCVVSAPL GSGALSSSGS PLLQTMGFQQ MLMQDVNLPY MVGYQLQEQQ 180 HYQQLEQHQN PGLFYPVMNK ACMSPQEVSA MHAMYASRGG DNLGAAAQSP NPMLNVNGSY 240 HSTPNNMEFI QGDSMGQMNT QWGNSMPEHF QTQSIWNEST THQSGSPGHN ASDEEHNISN 300 THAKLYVKAE GYEPSNMLLH FGLNNKPALE PASLTLNGSS PPHGSSTIEE EGSTPTNGYS 360 TNGYEDGDAV SSMWPDLEFF H*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MQLLVNPDSV DAGGGGPNEA AEQQLGGVAA GSSPASSPAG EGVSAGGSPG SGGTNLREKP  60
AKVIPCPRCE SMNTKFCYFN NYSVKQPRYF CRQCQRYWTV GGTLRNVPVG GGSRKKSRNQ  120
RSEPYLRSAG ATQCVVSAPL GSGALSSSGS PLLQTMGFQQ MLMQDVNLPY MVGYQLQEQQ  180
HYQQLEQHQN PGLFYPVMNK ACMSPQEVSA MHAMYASRGG DNLGAAAQSP NPMLNVNGSY  240
HSTPNNMEFI QGDSMGQMNT QWGNSMPEHF QTQSIWNEST THQSGSPGHN ASDEEHNISN  300
THAKLYVKAE GYEPSNMLLH FGLNNKPALE PASLTLNGSS PPHGSSTIEE EGSTPTNGYS  360
TNGYEDGDAV SSMWPDLEFF H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373861.1	2e-81	uncharacterized protein LOC112281500
Refseq	XP_024373862.1	2e-81	uncharacterized protein LOC112281500
Refseq	XP_024373864.1	2e-81	uncharacterized protein LOC112281500
Refseq	XP_024373865.1	2e-81	uncharacterized protein LOC112281500
TrEMBL	A0A2K1KLP5	5e-80	A0A2K1KLP5_PHYPA; Uncharacterized protein
STRING	PP1S267_24V6.1	8e-81	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0020s0065.1.p