PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0020s0034.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 569aa    MW: 61179.4 Da    PI: 4.7959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0020s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20261310255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a++ a+++++g
  Sphfalx0020s0034.1.p 261 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDTAARNFRG 310
                           7********.**********94....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-33260319IPR001471AP2/ERF domain
PfamPF008475.0E-13261310IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22261319IPR016177DNA-binding domain
CDDcd000188.53E-33261320No hitNo description
PROSITE profilePS5103224.579261318IPR001471AP2/ERF domain
SMARTSM003803.8E-39261324IPR001471AP2/ERF domain
PRINTSPR003672.8E-11262273IPR001471AP2/ERF domain
PRINTSPR003672.8E-11284300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MQILCRQAAV RLSKLEPSES PPDSSSYGSP PVSRITSRLP NPLSEVSLVV SALVQPSATL  60
AAPGSAAAAT DYRYEAASSS HRAPDDIYQQ YGDIRRGGGG GGGELGDPTV GQKRYRAEEQ  120
ERDGEEEYGE LLWSTLQWID PESSSAAAWQ TVAEAEASRR RTDTTSMMIE GSEGGSGSSS  180
AYSSASIQPE ITYHSRSGKL PDLSSPELSS LPVKEELTKF EPMEGQAVEV GEASAMHSPM  240
EATGPLEPAS QPVVQPAKKR HYRGVRQRPW GKWAAEIRDP KKAARVWLGT FDTAEDAALA  300
YDTAARNFRG PRAKLNFPDH PPREPQEASP LSIPSPTMVL SQTSSTSLTT SVRAPSTSRA  360
MAAGDSMRQV PSSNMMSWSA APRVPTSSLV NISSMDIQRS PSNLPAVYTT YLSPDSVQQS  420
MTISDQQQSW SQRYGRFISA APTTTPPVYG FPYGSSNVLQ QPGSSNVIQY RFEDMPATNL  480
QAPQGEQAST SMPAHMPGQQ QQQASVEVGS SQSSLRQPEL SFDQIFEQTN SGWSPGSTVG  540
HEGSGLSPVQ DLVNTYFNIP DDKQPPEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24257318163ATERF1
3gcc_A2e-24257318163ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.17e-23related to AP2 6l