PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0019s0149.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRF
Protein Properties Length: 490aa    MW: 51247.3 Da    PI: 8.782
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0019s0149.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.55.8e-24138181144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+r r++ +
  Sphfalx0019s0149.2.p 138 DPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRHRPRRHAD 181
                           79**************************************9976 PP
2QLQ52.71.3e-1871106237
                   QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           +FT  Q+++L++Q+l++Ky++a++ vP++Ll +i++
  Sphfalx0019s0149.2.p  71 PFTSGQWAELEHQALIFKYMMAGVNVPQDLLIPIRR 106
                           9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.1E-970106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.6871106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.3E-1371105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.548138182IPR014977WRC domain
PfamPF088791.2E-19139179IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGSEHGGPGL CDTRLLIRGE SGPLSSSAYN HQSAAYHHYK PAGASLCGGA EGMNEMGTQS  60
LHSSISGGRA PFTSGQWAEL EHQALIFKYM MAGVNVPQDL LIPIRRSVAD LISGMTASHH  120
AANLRWGPIH RGVPSNADPE PGRCRRTDGK KWRCSRDVVP DQKYCERHMH RGRHRPRRHA  180
DGQAGATGGP PGPGSATSSS GGAAAVSGIT NVGPIRSSGS APTSASSFSL SSLRPSNLSV  240
KSFSSSHSGS PGSGGGSSPA ASSQFGQLPN LTSSPSGASN LSNKDYRYLG SMIKSEQGIG  300
SEQQILSSET SGSTGGGPGQ ESQMMSNLSR LPSLNWQHSM STKIRPAPEP KVNSNLLHYH  360
SPQMRGLLGQ DFGLLPETSQ VDVSGMQSAS QQQQQAYVNN AYGGGAESVS VGRESEGQPL  420
RHFFDDWPRS RDQSAMTWGS GVDDSERSNS DNLTHAPNNT QLSISIPITA PSSAALSAQH  480
SSSPPAGCR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400508.11e-146growth-regulating factor 4-like isoform X2
TrEMBLA0A2K1J2E51e-144A0A2K1J2E5_PHYPA; Uncharacterized protein
STRINGPP1S344_39V6.11e-145(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-32growth-regulating factor 5