PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0019s0092.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 473aa MW: 51193.7 Da PI: 5.726

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0019s0092.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	4.8e-11	217	262	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RRd++ s+f++L +llP +K + ++i+ + ++Y+k+L Sphfalx0019s0092.1.p 217 EHIARERQRRDNMTSRFSTLETLLPLG-----PKRDRSTIVDESIQYVKNL 262 699*********************5.....4**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.383	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-14	216	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-8	217	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.24E-13	217	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-10	218	267	No hit	No description
SMART	SM00353	3.6E-8	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MEQDLRREES NASLLQQQIV YDKYLSAVPF LQERKISLPA FDSTLIAASD TLESAVTTSS 60 QPVQQQTVID SLLLYTSPAA MEQQQVSGLL LPTTYTSSHN SLVPGISRSG SLDLDTGASL 120 ATVAFQCETQ AAVIRNEAAV GAAVTEWEAN VGGDATKVSH QLLAGVKRAR GGGGGGGSAD 180 HNAQGFLEEV QQQFRKKQQR SETTTSARWK RPIDQAEHIA RERQRRDNMT SRFSTLETLL 240 PLGPKRDRST IVDESIQYVK NLHHQISVLR QRRSDLKRTV ESSSSCLTTG EGTAGSTTTA 300 IFSTPIQGNN PCSIDTTTTT PAEEMPVSKG QGQSGDDTAV AASMMPMLVK EDSYIPEKQQ 360 SNSNVAATRK NGRSCADKLD VFMDLPEQVV IEMVCQPRPH IQSQILQAVE SLGLDVCQCS 420 LNKVVLRVVY VIVAKPRVVM SNAVSYDDIM EALKSALGTN IIPDTKPGIE II*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MEQDLRREES NASLLQQQIV YDKYLSAVPF LQERKISLPA FDSTLIAASD TLESAVTTSS  60
QPVQQQTVID SLLLYTSPAA MEQQQVSGLL LPTTYTSSHN SLVPGISRSG SLDLDTGASL  120
ATVAFQCETQ AAVIRNEAAV GAAVTEWEAN VGGDATKVSH QLLAGVKRAR GGGGGGGSAD  180
HNAQGFLEEV QQQFRKKQQR SETTTSARWK RPIDQAEHIA RERQRRDNMT SRFSTLETLL  240
PLGPKRDRST IVDESIQYVK NLHHQISVLR QRRSDLKRTV ESSSSCLTTG EGTAGSTTTA  300
IFSTPIQGNN PCSIDTTTTT PAEEMPVSKG QGQSGDDTAV AASMMPMLVK EDSYIPEKQQ  360
SNSNVAATRK NGRSCADKLD VFMDLPEQVV IEMVCQPRPH IQSQILQAVE SLGLDVCQCS  420
LNKVVLRVVY VIVAKPRVVM SNAVSYDDIM EALKSALGTN IIPDTKPGIE II*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	8e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0019s0092.1.p