PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0019s0088.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 612aa MW: 67594.2 Da PI: 6.7998 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42 | 2.5e-13 | 215 | 296 | 2 | 77 |
trihelix 2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 W++ e aL++a+re++ +l ++ k++ +W+ev + g+ r+pk+ + kw+nl++ +k+i++++kk ++ + Sphfalx0019s0088.3.p 215 WQDPEMDALVRAYREVHMKLAAAgkkgkqvfKSATDKWKEVQTLLFNVGVDRQPKEIERKWSNLSTAFKQIADWNKKV--GHPN 296 ********************98534344444599******************************************95..3443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.4E-9 | 214 | 302 | No hit | No description |
Gene3D | G3DSA:3.40.50.620 | 6.0E-79 | 386 | 602 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 5.63E-50 | 389 | 605 | No hit | No description |
CDD | cd09286 | 4.98E-102 | 390 | 602 | No hit | No description |
TIGRFAMs | TIGR00482 | 9.0E-44 | 395 | 602 | IPR005248 | Probable nicotinate-nucleotide adenylyltransferase |
Pfam | PF01467 | 2.7E-23 | 395 | 576 | IPR004821 | Cytidyltransferase-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009435 | Biological Process | NAD biosynthetic process | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0000309 | Molecular Function | nicotinamide-nucleotide adenylyltransferase activity | ||||
GO:0004515 | Molecular Function | nicotinate-nucleotide adenylyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MEQGANSAAM ESSLSEQTHM GYVPPAYSRD AYGAAAEREV VAYAREGFLR ESQGFPPPPP 60 HHHHHHIDRS TYTHDAYPQD GVPKDGQVFH RDNSLMRDNT GNNKKQKGTD WWHESQVSEQ 120 PAAAPKEDID PTGNSHAVAP IMPSSFGGVV GFPGIVLGSQ MVGAEGQAGS MEEGECGGSS 180 GGGVGIGEEG DDGEGDGKER SEKEGSAKKK RAEMWQDPEM DALVRAYREV HMKLAAAGKK 240 GKQVFKSATD KWKEVQTLLF NVGVDRQPKE IERKWSNLST AFKQIADWNK KVGHPNYWEL 300 DETLKKEKTK AKELPATFRV QLFDAMAEFL GDRVGTHRSR SPASSHMALP GLPYAVNSTG 360 SSGVVEVTLP MDKLAVHTTP MDNYQKRTQV VLVSTGSFNP PTYMHLRMFE LAKDALLSEG 420 YDVLGCYMSP VGDAYNKKGL APAEHRIRLC QLATQDSPFV MVDSWEATQS SYQRTLTVLS 480 RVEAAVNSRA FAAEEKVRVM LLCGTDLLES MTKPGVWIPE QVRVILQEHG VVCICRTGQD 540 TRQLLLEHDI LFSNRRHIMI VDELIHNDVS STKVRRNIAR GLSVKYLVAD TVINYIKTHQ 600 LYTSNPVAHQ P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1kqn_A | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_B | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_C | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_D | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_E | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_F | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_A | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_B | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_C | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_D | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_E | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_F | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_A | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_B | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_C | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_D | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_E | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_F | 5e-59 | 381 | 604 | 1 | 256 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358097.1 | 0.0 | uncharacterized protein LOC112273477 isoform X5 | ||||
Refseq | XP_024358098.1 | 0.0 | uncharacterized protein LOC112273477 isoform X5 | ||||
TrEMBL | A0A2K1IWA5 | 0.0 | A0A2K1IWA5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S241_77V6.2 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0019s0088.3.p |