PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0019s0088.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 612aa    MW: 67594.2 Da    PI: 6.7998
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0019s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix422.5e-13215296277
              trihelix   2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                           W++ e  aL++a+re++ +l ++        k++  +W+ev   +   g+ r+pk+ + kw+nl++ +k+i++++kk   ++ +
  Sphfalx0019s0088.1.p 215 WQDPEMDALVRAYREVHMKLAAAgkkgkqvfKSATDKWKEVQTLLFNVGVDRQPKEIERKWSNLSTAFKQIADWNKKV--GHPN 296
                           ********************98534344444599******************************************95..3443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-9214302No hitNo description
Gene3DG3DSA:3.40.50.6206.0E-79386602IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523745.63E-50389605No hitNo description
CDDcd092864.98E-102390602No hitNo description
TIGRFAMsTIGR004829.0E-44395602IPR005248Probable nicotinate-nucleotide adenylyltransferase
PfamPF014672.7E-23395576IPR004821Cytidyltransferase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009435Biological ProcessNAD biosynthetic process
GO:0009555Biological Processpollen development
GO:0009860Biological Processpollen tube growth
GO:0000309Molecular Functionnicotinamide-nucleotide adenylyltransferase activity
GO:0004515Molecular Functionnicotinate-nucleotide adenylyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MEQGANSAAM ESSLSEQTHM GYVPPAYSRD AYGAAAEREV VAYAREGFLR ESQGFPPPPP  60
HHHHHHIDRS TYTHDAYPQD GVPKDGQVFH RDNSLMRDNT GNNKKQKGTD WWHESQVSEQ  120
PAAAPKEDID PTGNSHAVAP IMPSSFGGVV GFPGIVLGSQ MVGAEGQAGS MEEGECGGSS  180
GGGVGIGEEG DDGEGDGKER SEKEGSAKKK RAEMWQDPEM DALVRAYREV HMKLAAAGKK  240
GKQVFKSATD KWKEVQTLLF NVGVDRQPKE IERKWSNLST AFKQIADWNK KVGHPNYWEL  300
DETLKKEKTK AKELPATFRV QLFDAMAEFL GDRVGTHRSR SPASSHMALP GLPYAVNSTG  360
SSGVVEVTLP MDKLAVHTTP MDNYQKRTQV VLVSTGSFNP PTYMHLRMFE LAKDALLSEG  420
YDVLGCYMSP VGDAYNKKGL APAEHRIRLC QLATQDSPFV MVDSWEATQS SYQRTLTVLS  480
RVEAAVNSRA FAAEEKVRVM LLCGTDLLES MTKPGVWIPE QVRVILQEHG VVCICRTGQD  540
TRQLLLEHDI LFSNRRHIMI VDELIHNDVS STKVRRNIAR GLSVKYLVAD TVINYIKTHQ  600
LYTSNPVAHQ P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1kqn_A5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_B5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_C5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_D5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_E5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_F5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_A5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_B5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_C5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_D5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_E5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_F5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_A5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_B5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_C5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_D5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_E5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_F5e-593816041256NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358097.10.0uncharacterized protein LOC112273477 isoform X5
RefseqXP_024358098.10.0uncharacterized protein LOC112273477 isoform X5
TrEMBLA0A2K1IWA50.0A0A2K1IWA5_PHYPA; Uncharacterized protein
STRINGPP1S241_77V6.20.0(Physcomitrella patens)