PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0019s0021.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 713aa MW: 82325.3 Da PI: 6.245

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0019s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	155	174	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0019s0021.1.p 155 CSTCGPSFEDMGKYSSHLRK 174 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	1.4E-49	11	197	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.538	153	185	IPR007087	Zinc finger, C2H2
Pfam	PF13960	2.7E-36	376	490	IPR025452	Domain of unknown function DUF4218
Pfam	PF13952	9.0E-8	588	661	IPR025312	Domain of unknown function DUF4216

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MYRCTDLAEL MVWHKEHRSE PSVMRLPVDS PAHKHVESTW PEFECDPRHV RLGLASDGVS 60 PHSLGGKGRP TSVWPVVVMN YNLPPWLSMK KGFLLLSLII PGPSKVKNLD TYLALVVDEL 120 KTLWDGLRAI CMWTMHDYPR FGFVSGLQTQ GYKACSTCGP SFEDMGKYSS HLRKIVYLGH 180 TKFLPLGHDM RSDPLLFSSF DMPYGDERDI PEATTFAYWR DVANRVIDLN DSMVFEGSGL 240 TRWGILNSLP YWGELKIRHL LDPMHIEGND SNFREACEDF ERHPDVWIIV DPNTGIEQRP 300 SAPWTFTTQE RKDFRNRIGE MRFPTGYGAN LQKAFGRDDD HKWPRYLKTH DYHRLLQHIL 360 PVAIIGLASA EVQDALWSLG NLLRWVCSKE LFVEEIPRMR VIAAEVVCKL EKAFPPSLFD 420 CQVHLLVHLV DEIAIAGPVH CRWMYWLERY MAVLKGYVRN HAQVEGSMAA GHLAAESMFY 480 CTNILATIDP SCPHVWMEER EEEEDRLIGA IKTRMLLPIE LIQLTTFLLN NNNVMEEWRN 540 FYENAKIQGQ FIQDSRSSRH DRNIVRDIVP HYGKLEEILV VSYDAHSKFE EYVFKCKWFK 600 VNLAGANCTV VQDECGHTQL KTFATSYQPF HWQTSEPFTF PSHVEQCFYL PYPPNPEEWS 660 LVVTYVPRSR SILGEKPEVV FTTSEVDDDH ACDYILLHNV HCVIFCPFYS IV*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MYRCTDLAEL MVWHKEHRSE PSVMRLPVDS PAHKHVESTW PEFECDPRHV RLGLASDGVS  60
PHSLGGKGRP TSVWPVVVMN YNLPPWLSMK KGFLLLSLII PGPSKVKNLD TYLALVVDEL  120
KTLWDGLRAI CMWTMHDYPR FGFVSGLQTQ GYKACSTCGP SFEDMGKYSS HLRKIVYLGH  180
TKFLPLGHDM RSDPLLFSSF DMPYGDERDI PEATTFAYWR DVANRVIDLN DSMVFEGSGL  240
TRWGILNSLP YWGELKIRHL LDPMHIEGND SNFREACEDF ERHPDVWIIV DPNTGIEQRP  300
SAPWTFTTQE RKDFRNRIGE MRFPTGYGAN LQKAFGRDDD HKWPRYLKTH DYHRLLQHIL  360
PVAIIGLASA EVQDALWSLG NLLRWVCSKE LFVEEIPRMR VIAAEVVCKL EKAFPPSLFD  420
CQVHLLVHLV DEIAIAGPVH CRWMYWLERY MAVLKGYVRN HAQVEGSMAA GHLAAESMFY  480
CTNILATIDP SCPHVWMEER EEEEDRLIGA IKTRMLLPIE LIQLTTFLLN NNNVMEEWRN  540
FYENAKIQGQ FIQDSRSSRH DRNIVRDIVP HYGKLEEILV VSYDAHSKFE EYVFKCKWFK  600
VNLAGANCTV VQDECGHTQL KTFATSYQPF HWQTSEPFTF PSHVEQCFYL PYPPNPEEWS  660
LVVTYVPRSR SILGEKPEVV FTTSEVDDDH ACDYILLHNV HCVIFCPFYS IV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0019s0021.1.p